Os01g0679600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0679600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.94 | 0.329 | 10.8 | -1.91 | 0.599 | -0.384 | 0.0423 | 1.75 | -0.187 | 0.11 | 18.91 | 1596 | -- | -- |
| 51.98 | 0.336 | 10.8 | -1.84 | 0.639 | -0.714 | 0.0157 | -- | -0.164 | 23.8 | 18.3 | 2922 | -- | -- |
| 48.93 | 0.326 | 10.8 | -1.91 | 0.599 | -0.413 | -- | 1.72 | -0.186 | 0.108 | 18.87 | 1594 | -- | -- |
| 51.54 | 0.334 | 10.8 | -1.84 | 0.578 | -0.779 | -- | -- | -0.176 | 0.0491 | 18.3 | 3010 | -- | -- |
| 69.88 | 0.389 | 10.8 | -1.94 | -- | -0.54 | -- | 1.17 | -0.206 | -- | 18.3 | 2324 | -- | -- |
| 59.59 | 0.362 | 10.8 | -1.48 | 0.59 | -- | 0.107 | -- | -0.0401 | 0.168 | -- | -- | -- | -- |
| 59.64 | 0.362 | 10.8 | -1.48 | 0.59 | -- | -- | -- | -0.0406 | 0.178 | -- | -- | -- | -- |
| 71.12 | 0.393 | 10.8 | -1.8 | -- | -0.773 | -- | -- | -0.173 | -- | 18.4 | 2378 | -- | -- |
| 82.7 | 0.424 | 10.7 | -- | 0.577 | 0.854 | -- | -- | 0.481 | 0.671 | 26.14 | 47520 | -- | -- |
| 81.52 | 0.422 | 10.8 | -1.46 | -- | -- | -- | -- | -0.0318 | -- | -- | -- | -- | -- |
| 117.6 | 0.507 | 10.7 | -- | 0.57 | -- | -- | -- | 0.125 | 0.0362 | -- | -- | -- | -- |
| 105.58 | 0.479 | 10.7 | -- | -- | 0.829 | -- | -- | 0.456 | -- | 26.1 | 47520 | -- | -- |
| 138.04 | 0.548 | 10.7 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 2 | 48.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 3 | 48.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 5 | 48.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 17 | 49.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 20 | 49.07 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 22 | 49.08 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 23 | 49.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 105 | 49.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 112 | 49.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 120 | 49.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 132 | 49.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 133 | 49.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 145 | 49.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 173 | 49.38 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 174 | 49.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 180 | 49.39 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 185 | 49.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 186 | 49.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 187 | 49.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 4 |
| 198 | 49.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 200 | 49.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 203 | 49.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 205 | 49.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 214 | 49.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 220 | 49.42 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 238 | 49.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 288 | 49.49 | temperature | 20 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 496 | 49.78 | temperature | 20 | 1440 | < th | dose dependent | sin | 15 | NA |
| 508 | 49.80 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 536 | 49.85 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 540 | 49.85 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 582 | 49.93 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 599 | 49.95 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 669 | 50.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 671 | 50.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 848 | 50.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 897 | 50.44 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 944 | 50.51 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 955 | 50.53 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 986 | 50.56 | temperature | 20 | 1440 | < th | dose dependent | rect. | 18 | 23 |