BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0679600 Os01g0679600|AK062530
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G79260.1  | chr1:29813282-29814066 FORWARD LENGTH=167          212   9e-56

>AT1G79260.1 | chr1:29813282-29814066 FORWARD LENGTH=167
          Length = 166

 Score =  212 bits (539), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 124/143 (86%), Gaps = 1/143 (0%)

Query: 21  FLLGKWRGEGEGSFPTISPFRYGEELLFSHHPSKPVISYTQRTWKAASGEPMHAESGYWR 80
           +LLG WRG+GEG +PTI  FRYGEE+ FSH   KPVI+YTQ+TWK  SG PMHAESGY+R
Sbjct: 25  YLLGTWRGQGEGEYPTIPSFRYGEEIRFSHS-GKPVIAYTQKTWKLESGAPMHAESGYFR 83

Query: 81  PRPDGSVEVVISQSTGLAEVQKGSFDAEKKTVTLQSELVGNASKVKQITRAFQLVDGELS 140
           PRPDGS+EVVI+QSTGL EVQKG+++ +++++ L+S+LVGNASKVK+I+R F+LVDG+LS
Sbjct: 84  PRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLS 143

Query: 141 YVVQMATITTSLQPHLKALLKKI 163
           YVV+M+T T  LQPHLKA+L K+
Sbjct: 144 YVVRMSTTTNPLQPHLKAILDKL 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,113,886
Number of extensions: 116597
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)