Os01g0678000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0678000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 529.19 | 1.08 | 10 | 7.02 | 1.23 | 1.82 | -0.703 | -1.97 | 2.15 | 2.49 | 20 | 4286 | 3.05 | 0.899 |
| 544.29 | 1.09 | 9.93 | 7.67 | 1.26 | 1.87 | -1.07 | -- | 2.23 | 2.84 | 19.92 | 4302 | 2.87 | 0.702 |
| 530.57 | 1.07 | 10 | 7.06 | 1.23 | 1.82 | -- | -1.98 | 2.15 | 2.29 | 20 | 4287 | 3.07 | 0.867 |
| 545.05 | 1.09 | 9.92 | 7.7 | 1.17 | 1.87 | -- | -- | 2.29 | 2.36 | 19.9 | 4294 | 2.78 | 0.817 |
| 608.73 | 1.15 | 9.97 | 7.24 | -- | 2.12 | -- | -2.2 | 2.26 | -- | 19.95 | 4613 | 3.15 | 0.966 |
| 700.04 | 1.24 | 9.72 | 9.04 | 1.29 | -- | -0.885 | -- | 3.12 | 2.71 | -- | -- | -- | -- |
| 702.31 | 1.24 | 9.72 | 9.06 | 1.28 | -- | -- | -- | 3.13 | 2.43 | -- | -- | -- | -- |
| 618.43 | 1.16 | 9.89 | 7.75 | -- | 2.27 | -- | -- | 2.35 | -- | 19.98 | 4638 | 2.7 | 0.783 |
| 714.22 | 1.24 | 10.2 | -- | 0.799 | 7.03 | -- | -- | 0.505 | 5.41 | 17.66 | 47520 | 2.93 | 0.0325 |
| 798.53 | 1.32 | 9.71 | 9.11 | -- | -- | -- | -- | 3.16 | -- | -- | -- | -- | -- |
| 2866.16 | 2.5 | 9.94 | -- | 1.45 | -- | -- | -- | 2.12 | 2.54 | -- | -- | -- | -- |
| 750.23 | 1.28 | 10.3 | -- | -- | 7.31 | -- | -- | 0.341 | -- | 17.54 | 47520 | 2.85 | 0.199 |
| 2990.13 | 2.55 | 9.93 | -- | -- | -- | -- | -- | 2.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 502.94 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 7 | 516.97 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 11 | 520.65 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 14 | 522.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 21 | 525.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 22 | 525.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 29 | 527.26 | wind | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 44 | 530.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 46 | 530.92 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 53 | 531.65 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 80 | 535.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 81 | 535.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 87 | 535.88 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 131 | 538.47 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 17 |
| 135 | 538.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 146 | 538.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 151 | 539.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 164 | 539.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 172 | 539.80 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 174 | 539.86 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 179 | 539.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 186 | 540.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 196 | 540.33 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 247 | 541.01 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 255 | 541.19 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 19 |
| 256 | 541.20 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 276 | 541.50 | temperature | 20 | 4320 | > th | dose independent | sin | 9 | NA |
| 286 | 541.68 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 310 | 541.91 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 322 | 542.10 | temperature | 20 | 4320 | < th | dose independent | sin | 9 | NA |
| 368 | 542.73 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 378 | 542.85 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 384 | 542.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 461 | 543.80 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 486 | 544.10 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 10 | NA |
| 489 | 544.13 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 528 | 544.51 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 540 | 544.60 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 579 | 544.89 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 635 | 545.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 697 | 545.71 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 722 | 545.83 | radiation | 10 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 744 | 545.89 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 793 | 546.10 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 809 | 546.17 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 819 | 546.23 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 875 | 546.50 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 3 | 23 |