BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0678000 Os01g0678000|Os01g0678000
(900 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21700.1 | chr4:11529956-11532844 FORWARD LENGTH=963 318 6e-87
AT1G52780.1 | chr1:19658846-19662025 FORWARD LENGTH=1060 122 9e-28
>AT4G21700.1 | chr4:11529956-11532844 FORWARD LENGTH=963
Length = 962
Score = 318 bits (816), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 256/862 (29%), Positives = 402/862 (46%), Gaps = 91/862 (10%)
Query: 59 SFQISIGYFSSGG---NSLFSADDDYVNPRSFSFVPHGVFRT-KDPTIIHLTATLVLSGP 114
S + +FS G N S + D + R F P + +T D I + A L L
Sbjct: 82 SLAFDVSFFSGGDLFFNRFQSQNGDVKSAR---FRPKSIRKTLGDGKIYKVEAKLTLQIS 138
Query: 115 R---SSTYIGHH--HHRYSITQT--------ISFILDGYYSFTSNDLCMVGFGTNYAADG 161
+ SS+Y G + + Q SF G++S ++ +CMVG + +G
Sbjct: 139 KTSASSSYYGGDFGQKKLQVMQIDGRSSWGGASFDFYGFWSESTGQVCMVGSTQVLSVEG 198
Query: 162 SIKLHEDSVLRLWVPRPSKLTNPLVTGHLEGTN----FETISLV-AYDESDNYVYSENAL 216
+ D+ L L + S + LV G LE + F+T+ ++ A + NY Y
Sbjct: 199 TRLKIFDARLMLNYSKESNIYGSLVKGVLESVDSLSEFKTVLILGARNTPLNYEYK---- 254
Query: 217 CPPFMLENSMLEQAQAVKENFNCDQL----------KTHLRRL-YKLEYMVDDPLAPRGY 265
+LE S L+ E+ + + + ++H+ L Y+ + VD +P G
Sbjct: 255 ----LLEQSKLDCGVNGGESLSLENVLGGMCKVFEGRSHVFGLMYRNDCGVDHSCSPFGS 310
Query: 266 NMWSHATRMYINHVHCTANGAVRAYVEFYNDT---KMLPYKGRFMVVEEALVADGYWDPT 322
++ M + C +R + F N + + P+ R +LVA+G WD
Sbjct: 311 DVEYTPGFMSMLSFLCDGE-KMRMLLSFSNMSGYSSLFPFDPR-----TSLVAEGSWDVE 364
Query: 323 TGQLCFNACPIVRSVSGLSHTNFVVQDCKIKMSFRFVDVWTIRDRSVIAGMLWNSSQGIV 382
+ C AC I+ LS N VV DC +++S RF + +I+ + + G LW++
Sbjct: 365 RNRFCGVACRILNFSDSLS--NAVVDDCSLRLSLRFPAILSIKSMAPVVGELWSAQ---A 419
Query: 383 NNSRAIPGIISVSGIQEHWENISHVKYTYTVVDEAKKHYISSGLSNKKKKIKGSFPGNGT 442
+ + I S + + ++Y YT + K +G S K+K +P T
Sbjct: 420 ESDPSYFRRIEFSSLNDQLWRFPSLRYEYTESERVGK-LCGAGKSRPKRK-GNHYPDAQT 477
Query: 443 YSYHDLEFRFIANHVGSGDAYPMTIGSMMVYEDRLAANDSLSDPMVVGMKHELLNVSYDI 502
D+ F + G G+ S DRL D L VG+ +NV+
Sbjct: 478 ---SDMRFVMSVKYSGEGNVLRTARASPYFVGDRLY-RDLLVRGQGVGLTGIPMNVNSVT 533
Query: 503 RYYAPPENWIRPKNGSYSISLHERRISAEGIYDRKRGTLCMIGCREI---------NSST 553
+ + IR N + S I AEG YDR G LCM+GC+ + N +
Sbjct: 534 KSFTNITYRIRSLNPN---SESRGDIYAEGTYDRDTGELCMVGCQSVRLKNTVAIQNETV 590
Query: 554 DCLVLITVQFSSLDAKTQGHGVGAISSLREKNDRLFFEKIDITLYGMYTEQLFEAISRMD 613
DC + I + FS +D+++ G I S REK D L+ ++++ +Y Q E++ RMD
Sbjct: 591 DCSLAIKINFSPIDSRSDDRLKGTIKSTREKTDPLYVGRMEVLSRSIYVHQAKESVWRMD 650
Query: 614 MESIMLVLSTTLSCVFTILQILHTKKNPEVPPATSITMLITLALGYLTPLVLNFEALFLS 673
+E M+++S TLSC+F +Q+ H K++ E P S+ MLI + LG++ PL+LNFE LF
Sbjct: 651 LEVAMVLVSNTLSCLFLGMQLYHMKQHQEALPFISVAMLILITLGHMIPLLLNFEELFKG 710
Query: 674 RRKQYVPFFRNNR-VELNEVMLRVPTLIAFVLHLRLLQLVWYGRKP-DHQSKAETFSIAK 731
Q FF N+R +E E+++R+ TLIAF+L RLLQL W RK DH + + + A+
Sbjct: 711 SHNQRNLFFENDRWLEAKEIVVRIVTLIAFLLECRLLQLAWTARKTGDHHHREDVWK-AE 769
Query: 732 RKALQICLSLYFXXXXXXXXXXXXNVHTR------------RESPVVVRISQEPATIWED 779
+K +CL LY R PV ++ S + +W+D
Sbjct: 770 KKVSYVCLPLYITGGLIAWLVNRNRTPKRIVYIGKPQARNLLYRPVNLKRSFQRPPLWKD 829
Query: 780 LVSYAGLILDGFLLPQIIFNRLSGSRVQAISPWFYIGGTLIRAMPHVYDLSRAQNYIPSL 839
L SY GL+LD FLLPQI+FN S S ++ ++ FY+G + +R +PH YDL R+ +Y L
Sbjct: 830 LKSYGGLMLDAFLLPQILFNGFSNSDLKPLAALFYVGNSFVRLLPHAYDLYRSHSYGKIL 889
Query: 840 RSSYIYANSHDDLFSAAWDVII 861
S+IYAN D +S AWD+II
Sbjct: 890 DWSFIYANHKMDYYSTAWDIII 911
>AT1G52780.1 | chr1:19658846-19662025 FORWARD LENGTH=1060
Length = 1059
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 179/768 (23%), Positives = 299/768 (38%), Gaps = 140/768 (18%)
Query: 181 LTNPLVTGHLEGTNFETISLVAYDESDNYVYSENALCPPFMLENSMLEQAQAVKENFNCD 240
++N LV+ + ++ + + VY E C +L+ V N+ C
Sbjct: 283 VSNDLVSKACDPYPYKNDTFTSSGSGGINVYKEKGFCD--LLQRVTNRAPLTVVPNWKCH 340
Query: 241 QLKTHLRRLYKLEYMVDDPLAPRGYNMWSHATRMYINHVHCTANGA---------VRAYV 291
+ +L + D + ++Y+ +VHC A V A
Sbjct: 341 GTDEYCSKLGPFAFDKDIKSTDGSFK----DVKLYMQNVHCEETAARSQSDAVTKVSAVF 396
Query: 292 EFYNDTKMLPYKG-RFMVVEEALVADGYWDPTTGQLCFNACPIVRSVSGLSHTNFVVQDC 350
+ + L G R + + A+G W P++GQLC C V C
Sbjct: 397 RAVHPNENLYISGMRSGIDNMTVTAEGIWKPSSGQLCMVGC-----------RRGQVDGC 445
Query: 351 KIKMSFRFVDVWTIRDRSVIAGML--WNSSQGIVNN--SRAIPGIISVSGIQEHW-ENIS 405
++ ++IR RS++ G N+ + + + + ++ +Q ++ + S
Sbjct: 446 NARICLYIPTTFSIRQRSILVGTFSCLNTEKNLTPSFFPLSFEKLVEPMDMQNYFHSSAS 505
Query: 406 HVKYTYTVVDEA-----KKHYISSGLSNKKKKIKGSFPGNGTY--------------SYH 446
H Y+Y+ +D+A + S G KK + FP ++H
Sbjct: 506 HPFYSYSKLDDAGAILERNEEFSFGTIIKKSVMH--FPKLEDSDDLLSSLSLLAEDLTFH 563
Query: 447 DLEFRFIANHVGSGDAYPMTIGSMMVYEDRL--AANDSLSDPMV-------VGMKHELLN 497
F SG + M + S+ +N S++D K LLN
Sbjct: 564 TPAF---TEKRASGTNFGMDVLSLGPLFGLFWRTSNFSIADQTTPYRTKAEYTEKQLLLN 620
Query: 498 VSYDIRYYAPPENWIRPKNGSYSISLHERRISAEGIYDRKRGTLCMIGCREINSS----- 552
VS I EN+ G++S+ + EG+YD G + ++GCR++ +S
Sbjct: 621 VSGQISLTG--ENF-----GNFSV------LYLEGLYDEHVGKMYLVGCRDVRASWKILF 667
Query: 553 --------TDCLVLITVQFSSLDAKTQGHGVG--AISSLREKNDRLFFEKIDI-TLYGMY 601
DCL+ + V + + ++ +ISS R ++D L+F+ I + T Y
Sbjct: 668 ESPDLEAGLDCLIDVVVSYPPIKSRWLADPTAKVSISSNRPEDDPLYFKPIKLKTTPIFY 727
Query: 602 TEQLFEAISRMDMESIMLVLSTTLS--CVFTILQILHTKKNPEVPPATSITMLITLALGY 659
Q + +SR +E I+ VL+ T S C+ ++L + N + P S+ ML ALGY
Sbjct: 728 RRQREDILSRAGVEGILRVLTLTFSIGCITSLL--FYVSSNTDSLPFVSLVMLGVQALGY 785
Query: 660 LTPLVLNFEALFLSRRKQY------VPFFRNNRVELNEVM---LRVPTLIAFVLHLRLLQ 710
PL+ EALF +RK P + R + V+ +++ ++ F+L LRL Q
Sbjct: 786 SLPLITGAEALF--KRKAASATTYETPSYDLQRSQWFNVIDYTVKLLVMVCFLLTLRLCQ 843
Query: 711 LVWYGRK------PDHQSKAETFSIAKRKALQICLSLYFXXXXXXXXXXXXNVHTRRESP 764
VW R P K + R+ L + L L+ H R
Sbjct: 844 KVWKSRARLLTRTPQEPHKVP----SDRRVLLVVLILHALGYIVALIR-----HPARADR 894
Query: 765 VVVRISQEPATIW--EDLVSYAGLILDGFLLPQIIFNRL--SGSRVQAISPWFYIGGTLI 820
+V A+ W + Y GL+ D FLLPQ+I N + SR Q + +Y G TL+
Sbjct: 895 LVGGSYGSNASNWWQTETEEYIGLVQDFFLLPQVIANAMWQIDSR-QPLRKLYYFGITLV 953
Query: 821 RAMPHVYDLSRAQNYIPSLRSSYIYANSHD------DLFSAAWDVIIP 862
R PH YD + S+ Y H+ D FS D+ IP
Sbjct: 954 RLFPHAYDY-----IVGSVPDPYFIGEEHEFVNPNFDFFSKFGDIAIP 996
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,716,444
Number of extensions: 778628
Number of successful extensions: 1635
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1622
Number of HSP's successfully gapped: 2
Length of query: 900
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 792
Effective length of database: 8,145,641
Effective search space: 6451347672
Effective search space used: 6451347672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)