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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0666000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0682) R2 : 0.394
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.27 (0.282) R2dE : 0.307 R2E : 0.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.08 (0.144) R2dN8 : 0.104 R2N8 : 0.0865
σ : 1.28
deviance : 756.85
__
_____
C
peak time of C : --
E
wheather : precipitation
threshold : 1.62
memory length : 1452
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.85
open length of G : 8.28

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
729.73 1.27 5.28 0.293 1.71 -1.64 0.68 -6.31 -0.989 2.94 0.7222 1446 9.9 7.97
736.32 1.26 5.35 0.0975 1.07 -3.39 2.19 -- -1.06 2.82 1.098 1448 9.7 8.35
718.19 1.25 5.32 0.587 1.46 -1.74 -- -7.35 -1.03 3.05 1.338 1449 9.75 7.78
747.48 1.27 5.37 0.071 1.12 -3.25 -- -- -1.04 3.56 1.074 1449 9.71 8.35
752.01 1.28 5.39 0.301 -- -3.31 -- -5.57 -1.13 -- 2.534 1451 9.7 7.89
888.29 1.4 5.4 0.703 1.95 -- 1.9 -- -1.12 2.58 -- -- -- --
900.9 1.41 5.4 0.654 1.96 -- -- -- -1.13 2.7 -- -- -- --
765.17 1.29 5.42 0.158 -- -3.54 -- -- -1.13 -- 1.929 1453 9.85 8.47
745.25 1.27 5.4 -- 0.978 -3.37 -- -- -1.1 3.66 0.9578 1450 9.73 8.37
1125.06 1.57 5.39 0.738 -- -- -- -- -1.08 -- -- -- -- --
912.17 1.41 5.42 -- 1.97 -- -- -- -1.2 2.7 -- -- -- --
756.85 1.28 5.39 -- -- -4.27 -- -- -1.08 -- 1.62 1452 9.85 8.28
1139.41 1.58 5.41 -- -- -- -- -- -1.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 749.89 precipitation 0.1 1440 < th dose independent rect. 10 8
2 749.89 precipitation 0.1 1440 < th dose dependent rect. 10 8
11 752.88 precipitation 0.1 1440 > th dose independent rect. 10 8
12 753.32 precipitation 0.1 1440 > th dose independent rect. 12 6
21 759.45 precipitation 0.1 1440 > th dose dependent rect. 10 8
22 759.69 precipitation 0.1 1440 > th dose dependent rect. 13 5
33 767.73 temperature 25.0 30 < th dose independent rect. 4 18
37 768.40 radiation 1.0 270 < th dose independent rect. 4 15
40 769.57 humidity 90.0 1440 > th dose independent rect. 16 2
44 771.04 temperature 30.0 10 < th dose dependent rect. 4 18
50 772.25 temperature 25.0 270 < th dose independent rect. 1 19
54 772.76 humidity 90.0 30 > th dose dependent rect. 8 14
60 773.55 radiation 1.0 270 < th dose dependent rect. 4 15
61 773.60 humidity 90.0 30 > th dose dependent rect. 17 5
73 774.58 radiation 1.0 270 < th dose dependent rect. 5 13
95 776.59 temperature 25.0 270 < th dose independent rect. 17 1
102 777.12 humidity 90.0 1440 < th dose independent rect. 17 1
123 778.42 humidity 70.0 270 > th dose dependent rect. 17 2
142 779.80 precipitation 0.1 270 > th dose independent rect. 3 17
146 780.02 radiation 1.0 270 < th dose independent sin 0 NA
153 780.45 precipitation 0.1 720 > th dose dependent sin 0 NA
199 782.94 radiation 1.0 270 > th dose independent sin 0 NA
202 783.01 humidity 90.0 10 > th dose dependent sin 21 NA
211 783.20 precipitation 0.1 720 > th dose dependent rect. 20 23
213 783.28 radiation 1.0 270 < th dose dependent rect. 17 1
225 783.63 humidity 90.0 10 > th dose independent rect. 4 19
234 784.00 atmosphere 995.0 90 > th dose dependent rect. 4 17
235 784.04 precipitation 0.1 270 > th dose independent sin 0 NA
236 784.04 precipitation 0.1 1440 > th dose dependent rect. 15 3
237 784.06 temperature 30.0 270 < th dose dependent rect. 1 19
247 784.68 humidity 90.0 10 > th dose dependent rect. 6 16
251 784.89 precipitation 0.1 270 < th dose independent sin 0 NA
252 784.89 precipitation 0.1 270 < th dose dependent sin 0 NA
271 785.44 atmosphere 995.0 10 > th dose dependent rect. 5 17
284 785.94 radiation 1.0 270 < th dose dependent rect. 13 5
287 786.11 precipitation 0.1 270 > th dose dependent rect. 2 20
314 786.60 wind 5.0 270 < th dose independent rect. 21 17
315 786.60 temperature 10.0 270 > th dose dependent rect. 19 20
326 786.94 humidity 90.0 1440 > th dose dependent rect. 17 1
327 786.95 temperature 10.0 270 > th dose dependent rect. 18 22
328 787.07 temperature 30.0 270 < th dose dependent rect. 17 1
333 787.19 wind 9.0 270 < th dose dependent rect. 21 17
359 787.77 precipitation 0.1 720 > th dose dependent rect. 16 22
376 788.09 precipitation 0.1 270 > th dose independent rect. 16 22
379 788.17 precipitation 0.1 270 > th dose independent rect. 13 21
406 788.91 precipitation 0.1 270 > th dose independent rect. 16 18
410 789.02 temperature 30.0 270 < th dose dependent rect. 16 3
411 789.08 precipitation 0.1 270 > th dose independent rect. 6 23
412 789.10 radiation 1.0 270 < th dose independent rect. 17 1
424 789.34 precipitation 0.1 720 > th dose dependent rect. 16 13
425 789.38 precipitation 0.1 270 > th dose independent no NA NA
426 789.38 precipitation 0.1 270 < th dose independent no NA NA
432 789.38 precipitation 0.1 270 < th dose dependent no NA NA
439 789.46 precipitation 0.1 270 > th dose independent rect. 9 23
445 789.50 precipitation 0.1 270 > th dose dependent no NA NA
446 789.50 precipitation 0.1 270 > th dose dependent rect. 13 22
454 789.56 precipitation 0.1 270 > th dose dependent rect. 9 23
465 789.68 atmosphere 1005.0 270 > th dose independent rect. 3 17
467 789.69 precipitation 0.1 270 > th dose dependent rect. 7 23
476 789.84 precipitation 0.1 270 < th dose independent rect. 17 23
478 789.84 precipitation 0.1 270 < th dose dependent rect. 17 23
479 789.85 temperature 25.0 270 > th dose independent rect. 17 22
553 791.10 radiation 1.0 270 < th dose dependent sin 0 NA
560 791.14 precipitation 0.1 720 > th dose dependent rect. 13 19
596 791.52 temperature 15.0 30 > th dose dependent rect. 9 19
599 791.55 precipitation 0.1 270 < th dose independent rect. 5 23
601 791.55 precipitation 0.1 270 < th dose dependent rect. 5 23
608 791.62 temperature 10.0 270 > th dose dependent rect. 21 17
718 792.56 precipitation 0.1 720 > th dose dependent rect. 9 14
736 792.82 precipitation 0.1 720 > th dose dependent rect. 13 9
738 792.85 humidity 90.0 90 > th dose independent rect. 16 6
753 792.96 precipitation 0.1 720 > th dose independent rect. 16 12
810 793.64 temperature 15.0 10 > th dose dependent rect. 23 17
823 793.76 precipitation 0.1 270 > th dose independent rect. 19 23
855 794.10 precipitation 0.1 720 > th dose independent rect. 17 5
883 794.36 precipitation 0.1 720 > th dose dependent rect. 17 6
887 794.40 precipitation 0.1 270 > th dose independent rect. 13 16
893 794.48 atmosphere 1005.0 270 > th dose independent rect. 14 6
931 794.94 temperature 25.0 270 > th dose independent rect. 23 15
987 795.82 temperature 10.0 270 > th dose dependent rect. 9 16
996 795.89 atmosphere 1005.0 270 > th dose independent rect. 15 4