BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0666000 Os01g0666000|AK070670
(295 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15080.1 | chr1:5188080-5189476 FORWARD LENGTH=291 313 7e-86
AT3G02600.1 | chr3:551534-554411 FORWARD LENGTH=365 306 8e-84
AT2G01180.1 | chr2:107182-108555 REVERSE LENGTH=328 290 5e-79
AT3G18220.1 | chr3:6248355-6249799 FORWARD LENGTH=309 263 7e-71
>AT1G15080.1 | chr1:5188080-5189476 FORWARD LENGTH=291
Length = 290
Score = 313 bits (802), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 154/275 (56%), Positives = 180/275 (65%)
Query: 16 TIRSHGAAVARSHAYDWXXXXXXXXXXXXXNAIEPFHRFVGAGMMTDLRYPMKRNTXXXX 75
TIRSHG VAR H +DW N IEPFHRFVG M+TDLRYP++ NT
Sbjct: 10 TIRSHGVTVARFHMHDWLILLLLIVIEIVLNVIEPFHRFVGEDMLTDLRYPLQDNTIPFW 69
Query: 76 XXXXXXXXGPMIVFTVVYFRRRNVYDLHHAVLGILFSVLITGVLTDAIKDAVGRPRPNFF 135
P V V YF R +VYDLHHA+LG+LFSVLITGV+TDAIKDAVGRPRP+FF
Sbjct: 70 AVPLIAVVLPFAVICVYYFIRNDVYDLHHAILGLLFSVLITGVITDAIKDAVGRPRPDFF 129
Query: 136 WRCFPDGIAVFDNVTTGVICHGDASVIKEGHKSFPSGHTSWSFAGLGFLSWYLAGKITVF 195
WRCFPDGI +F NVT V+C G V+KEGHKSFPSGHTSWSFAGLGFLS YL+GKI VF
Sbjct: 130 WRCFPDGIGIFHNVTKNVLCTGAKDVVKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIRVF 189
Query: 196 DRRGHXXXXXXXXXXXXXXXXXXISRVDDYWHHWQDVCTGGVLGLVVASVCYLQFFPAPS 255
D+RGH +SRVDDYWHHWQDV G ++GL VA+ CYLQFFP P
Sbjct: 190 DQRGHVAKLCIVILPLLVAALVGVSRVDDYWHHWQDVFGGAIIGLTVATFCYLQFFPPPY 249
Query: 256 DEKGFWPHAHFRYITERGSENPTQQATEPLDAMET 290
D G+ PHA+F+ + + ++ L +T
Sbjct: 250 DPDGWGPHAYFQMLADSRNDVQDSAGMNHLSVRQT 284
>AT3G02600.1 | chr3:551534-554411 FORWARD LENGTH=365
Length = 364
Score = 306 bits (784), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 150/283 (53%), Positives = 188/283 (66%), Gaps = 5/283 (1%)
Query: 16 TIRSHGAAVARSHAYDWXXXXXXXXXXXXXNAIEPFHRFVGAGMMTDLRYPMKRNTXXXX 75
T+RSHG VAR+H +DW I PF+RFVG MMTDL YP+K NT
Sbjct: 60 TLRSHGMTVARTHMHDWIILVLLVILECVLLIIHPFYRFVGKDMMTDLSYPLKSNTVPIW 119
Query: 76 XXXXXXXXGPMIVFTVVYFRRRNVYDLHHAVLGILFSVLITGVLTDAIKDAVGRPRPNFF 135
P+++F +YFRRR+VYDLHHAVLG+L+SVL+T VLTDAIK+AVGRPRP+FF
Sbjct: 120 SVPVYAMLLPLVIFIFIYFRRRDVYDLHHAVLGLLYSVLVTAVLTDAIKNAVGRPRPDFF 179
Query: 136 WRCFPDGIAVFDNVTTGVICHGDASVIKEGHKSFPSGHTSWSFAGLGFLSWYLAGKITVF 195
WRCFPDG A++D++ VICHGD SVI+EGHKSFPSGHTSWSF+GLGFLS YL+GKI F
Sbjct: 180 WRCFPDGKALYDSLGD-VICHGDKSVIREGHKSFPSGHTSWSFSGLGFLSLYLSGKIQAF 238
Query: 196 DRRGHXXXXXXXXXXXXXXXXXXISRVDDYWHHWQDVCTGGVLGLVVASVCYLQFFPAPS 255
D +GH ISRVDDYWHHWQDV GG+LGL ++++CYLQFFP P
Sbjct: 239 DGKGHVAKLCIVILPLLFAALVGISRVDDYWHHWQDVFAGGLLGLAISTICYLQFFPPPY 298
Query: 256 DEKGFWPHAHFRYI----TERGSENPTQQATEPLDAMETGRGG 294
+G+ P+A+F+ + + + QQ ++ E GG
Sbjct: 299 HTEGWGPYAYFQVLEAARVQGAANGAVQQPPPQVNNGEEEDGG 341
>AT2G01180.1 | chr2:107182-108555 REVERSE LENGTH=328
Length = 327
Score = 290 bits (743), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 141/274 (51%), Positives = 175/274 (63%), Gaps = 1/274 (0%)
Query: 16 TIRSHGAAVARSHAYDWXXXXXXXXXXXXXNAIEPFHRFVGAGMMTDLRYPMKRNTXXXX 75
TI+SHG VA H +DW N I PF+R+VG MMTDL+YP K NT
Sbjct: 35 TIKSHGGRVASKHKHDWIILVILIAIEIGLNLISPFYRYVGKDMMTDLKYPFKDNTVPIW 94
Query: 76 XXXXXXXXGPMIVFTVVYFRRRNVYDLHHAVLGILFSVLITGVLTDAIKDAVGRPRPNFF 135
P+IVF Y +R VYDLHH++LG+LF+VLITGV+TD+IK A GRPRPNF+
Sbjct: 95 SVPVYAVLLPIIVFVCFYLKRTCVYDLHHSILGLLFAVLITGVITDSIKVATGRPRPNFY 154
Query: 136 WRCFPDGIAVFDNVTTGVICHGDASVIKEGHKSFPSGHTSWSFAGLGFLSWYLAGKITVF 195
WRCFPDG ++D + GV+CHG A+ +KEGHKSFPSGHTSWSFAGL FLS YL+GKI F
Sbjct: 155 WRCFPDGKELYDAL-GGVVCHGKAAEVKEGHKSFPSGHTSWSFAGLTFLSLYLSGKIKAF 213
Query: 196 DRRGHXXXXXXXXXXXXXXXXXXISRVDDYWHHWQDVCTGGVLGLVVASVCYLQFFPAPS 255
+ GH ISRVDDYWHHWQDV G ++G +VA+ CY QF+P P
Sbjct: 214 NNEGHVAKLCLVIFPLLAACLVGISRVDDYWHHWQDVFAGALIGTLVAAFCYRQFYPNPY 273
Query: 256 DEKGFWPHAHFRYITERGSENPTQQATEPLDAME 289
E+G+ P+A+F+ ERG + Q + L AM
Sbjct: 274 HEEGWGPYAYFKAAQERGVPVTSSQNGDALRAMS 307
>AT3G18220.1 | chr3:6248355-6249799 FORWARD LENGTH=309
Length = 308
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 140/266 (52%), Positives = 169/266 (63%)
Query: 16 TIRSHGAAVARSHAYDWXXXXXXXXXXXXXNAIEPFHRFVGAGMMTDLRYPMKRNTXXXX 75
+++SHG VAR H DW N IEPFHR++G M+TDL +P +T
Sbjct: 10 SVKSHGWKVAREHLCDWLILVVLGLIDIVLNVIEPFHRYIGPDMLTDLTFPFYEDTIPMW 69
Query: 76 XXXXXXXXGPMIVFTVVYFRRRNVYDLHHAVLGILFSVLITGVLTDAIKDAVGRPRPNFF 135
P+ +F V Y+ RR+VYDLHHA+LGI FS L+TGV TD+IKDAVGRPRPNFF
Sbjct: 70 AVPIICILVPICIFIVYYYYRRDVYDLHHAILGIGFSCLVTGVTTDSIKDAVGRPRPNFF 129
Query: 136 WRCFPDGIAVFDNVTTGVICHGDASVIKEGHKSFPSGHTSWSFAGLGFLSWYLAGKITVF 195
+RCFP+G F T V+CHG +IKEG+KSFPSGHTSWSFAGL FL+WYL+GKI VF
Sbjct: 130 YRCFPNGKPKFHPDTKDVVCHGVKKIIKEGYKSFPSGHTSWSFAGLTFLAWYLSGKIKVF 189
Query: 196 DRRGHXXXXXXXXXXXXXXXXXXISRVDDYWHHWQDVCTGGVLGLVVASVCYLQFFPAPS 255
DRRGH ISRVDDYWHHW DV G ++G+ VAS YL FFP P
Sbjct: 190 DRRGHVAKLCLVFLPILISILIGISRVDDYWHHWTDVFAGAIIGIFVASFSYLHFFPYPY 249
Query: 256 DEKGFWPHAHFRYITERGSENPTQQA 281
DE G+ PHA+FR + ER + T
Sbjct: 250 DENGWAPHAYFRMLAERSTGRATTMT 275
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,883,247
Number of extensions: 219234
Number of successful extensions: 496
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 4
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)