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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0662800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, GATA-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0467) R2 : 0.11
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.1 (0.684) R2dE : 0.112 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.14 (0.0987) R2dN8 : 0.00413 R2N8 : -0.00126
σ : 0.876
deviance : 354.03
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1007
memory length : 176
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.6
open length of G : 2.42

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
343.56 0.871 3.24 0.541 0.143 3.4 -1 6.11 -0.125 5.36 1007 126 14.7 3.03
345.24 0.865 3.22 0.49 0.152 4.67 -1.14 -- -0.076 5.5 1007 156 14.5 2.88
345.65 0.866 3.24 0.548 0.151 3.45 -- 7.11 -0.117 5.96 1007 123 14.7 2.97
348.2 0.869 3.23 0.472 0.153 5.06 -- -- -0.113 6.44 1007 162 14.6 2.75
346.27 0.867 3.24 0.544 -- 3.19 -- 8.02 -0.0967 -- 1007 121 14.7 2.93
386.03 0.921 3.21 0.519 0.123 -- 1.19 -- 0.00741 16.8 -- -- -- --
389.67 0.924 3.21 0.525 0.133 -- -- -- 0.0136 15.8 -- -- -- --
348.87 0.87 3.23 0.471 -- 5.01 -- -- -0.0814 -- 1007 153 14.6 2.67
353.79 0.876 3.24 -- 0.145 5.21 -- -- -0.134 6.73 1007 157 14.6 2.63
390.64 0.924 3.21 0.519 -- -- -- -- 0.01 -- -- -- -- --
396.92 0.932 3.22 -- 0.123 -- -- -- -0.0448 15.9 -- -- -- --
354.03 0.876 3.24 -- -- 5.1 -- -- -0.14 -- 1007 176 14.6 2.42
397.75 0.931 3.22 -- -- -- -- -- -0.0476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 352.11 atmosphere 1005 90 > th dose dependent rect. 15 3
3 352.69 atmosphere 1005 90 > th dose dependent rect. 13 5
34 361.85 wind 7 30 > th dose independent rect. 16 2
38 362.19 temperature 20 720 > th dose dependent rect. 7 12
40 362.32 temperature 20 720 > th dose dependent sin 0 NA
45 362.42 temperature 30 720 < th dose dependent rect. 7 10
70 362.73 temperature 30 720 < th dose dependent rect. 6 13
73 362.75 temperature 10 720 > th dose dependent sin 0 NA
78 362.78 temperature 30 270 < th dose dependent rect. 11 6
86 362.84 temperature 30 720 < th dose dependent sin 23 NA
131 363.30 temperature 30 720 < th dose dependent rect. 5 16
134 363.34 temperature 10 270 > th dose dependent rect. 14 23
149 363.43 temperature 30 270 < th dose independent rect. 20 21
178 363.65 temperature 25 270 < th dose independent rect. 14 1
268 364.07 temperature 30 270 < th dose dependent rect. 13 3
274 364.09 temperature 25 720 > th dose dependent rect. 18 22
275 364.10 temperature 25 720 > th dose independent rect. 6 15
285 364.18 temperature 25 720 < th dose independent rect. 5 16
286 364.19 atmosphere 1005 90 > th dose independent rect. 13 5
291 364.21 atmosphere 1005 10 > th dose independent rect. 13 5
401 364.59 temperature 25 720 > th dose dependent rect. 14 23
433 364.67 temperature 25 720 > th dose dependent no NA NA
463 364.82 temperature 10 720 > th dose dependent rect. 24 21
481 364.89 temperature 10 720 > th dose dependent rect. 1 18
490 364.92 temperature 20 90 > th dose dependent rect. 17 23
525 365.05 temperature 20 90 > th dose dependent rect. 24 22
536 365.12 temperature 20 10 > th dose dependent rect. 24 23
552 365.21 temperature 25 720 < th dose independent sin 23 NA
585 365.33 temperature 15 10 > th dose dependent rect. 7 15
614 365.42 temperature 30 270 < th dose independent rect. 11 6
638 365.54 temperature 20 1440 > th dose dependent rect. 11 1
643 365.55 temperature 20 10 > th dose dependent rect. 17 23
672 365.65 temperature 25 720 > th dose independent sin 23 NA
683 365.68 atmosphere 1000 10 < th dose independent rect. 24 11
684 365.69 temperature 30 720 < th dose independent rect. 15 22
689 365.70 temperature 25 1440 > th dose dependent rect. 15 1
700 365.72 temperature 30 90 < th dose dependent rect. 21 22
711 365.77 temperature 30 270 < th dose independent rect. 12 15
721 365.80 temperature 20 90 > th dose dependent rect. 3 19
738 365.87 atmosphere 1000 90 < th dose independent rect. 1 9
805 366.05 atmosphere 1000 90 < th dose independent rect. 3 7
868 366.18 temperature 30 270 < th dose dependent rect. 11 17
869 366.18 temperature 20 10 > th dose dependent rect. 3 20
870 366.19 atmosphere 1000 90 < th dose independent rect. 5 5
875 366.20 temperature 30 720 > th dose independent rect. 15 21
901 366.24 wind 7 30 > th dose independent rect. 16 13
915 366.27 temperature 30 720 < th dose independent rect. 6 21
924 366.28 atmosphere 1000 90 < th dose independent rect. 7 3