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Os01g0662600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NifU-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15 (0.0126) R2 : 0.742
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.0309) R2dC : 0.744 R2C : 0.738
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0583 (0.0264) R2dN8 : 0.00356 R2N8 : -0.0021
σ : 0.237
deviance : 25.6
__
_____
C
peak time of C : 9.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.27 0.227 15 -0.0128 1.13 -0.174 0.336 -0.0917 0.0122 9.95 25.3 51 -- --
23.3 0.225 15 0.0106 1.13 -0.178 0.316 -- 0.0195 9.95 25.3 47 -- --
23.69 0.227 15 0.00901 1.13 -0.167 -- -0.0377 0.00954 9.94 25.23 47 -- --
23.68 0.227 15 0.0211 1.13 -0.173 -- -- 0.0189 9.93 25.24 41 -- --
67.16 0.382 15 0.0598 -- -0.78 -- -0.712 0.156 -- 26.1 710 -- --
25.25 0.236 15 -0.0338 1.12 -- 0.3 -- -0.0612 9.5 -- -- -- --
25.59 0.237 15 -0.0227 1.12 -- -- -- -0.0608 9.5 -- -- -- --
64.59 0.374 15 0.213 -- -0.859 -- -- 0.18 -- 26 725 -- --
23.7 0.227 15 -- 1.13 -0.172 -- -- 0.0153 9.94 25.27 41 -- --
98.82 0.464 15 -0.0303 -- -- -- -- -0.0576 -- -- -- -- --
25.6 0.237 15 -- 1.12 -- -- -- -0.0583 9.5 -- -- -- --
66 0.378 15 -- -- -0.836 -- -- 0.154 -- 26.03 725 -- --
98.84 0.464 15 -- -- -- -- -- -0.0543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.33 temperature 20.0 270 > th dose independent rect. 15 8
2 17.38 temperature 15.0 270 > th dose dependent rect. 16 7
3 17.39 temperature 20.0 90 > th dose independent rect. 17 6
48 18.48 temperature 10.0 30 > th dose dependent rect. 7 16
55 18.55 wind 5.0 30 < th dose independent rect. 18 5
62 18.62 temperature 25.0 270 > th dose independent rect. 18 1
78 18.88 radiation 30.0 10 < th dose dependent rect. 23 10
80 18.94 temperature 20.0 30 > th dose independent rect. 7 16
90 19.01 radiation 10.0 10 < th dose independent rect. 23 8
101 19.07 radiation 30.0 10 < th dose dependent rect. 23 8
107 19.11 radiation 20.0 10 < th dose dependent rect. 23 17
115 19.16 atmosphere 1010.0 90 < th dose independent rect. 17 6
118 19.19 precipitation 0.1 10 < th dose independent rect. 7 16
119 19.19 precipitation 0.1 10 < th dose dependent rect. 7 16
128 19.25 wind 9.0 30 < th dose dependent rect. 18 5
129 19.26 temperature 10.0 1440 > th dose independent rect. 24 8
132 19.26 temperature 30.0 1440 < th dose independent rect. 24 8
136 19.26 humidity 50.0 1440 > th dose independent rect. 24 8
141 19.26 atmosphere 995.0 1440 > th dose independent rect. 24 8
142 19.26 temperature 10.0 1440 > th dose independent rect. 8 16
146 19.28 wind 7.0 30 < th dose independent rect. 23 8
147 19.28 wind 9.0 30 < th dose independent rect. 7 16
152 19.31 temperature 10.0 30 > th dose independent rect. 23 8
153 19.31 temperature 30.0 30 < th dose independent rect. 23 8
154 19.31 humidity 50.0 30 > th dose independent rect. 23 8
157 19.31 atmosphere 995.0 30 > th dose independent rect. 23 8
161 19.31 temperature 10.0 30 > th dose independent rect. 7 16
163 19.31 atmosphere 1015.0 30 < th dose independent rect. 7 16
166 19.32 temperature 30.0 90 < th dose independent rect. 23 18
209 19.44 precipitation 0.1 30 < th dose independent rect. 23 8
211 19.44 precipitation 0.1 30 < th dose dependent rect. 23 8
213 19.45 atmosphere 1000.0 30 > th dose dependent rect. 18 5
220 19.47 radiation 20.0 90 < th dose independent rect. 17 6
223 19.47 temperature 10.0 90 > th dose independent rect. 23 18
224 19.47 radiation 40.0 90 < th dose dependent rect. 17 6
234 19.51 atmosphere 995.0 90 > th dose independent rect. 17 6
238 19.52 atmosphere 995.0 90 > th dose independent rect. 23 18
241 19.53 humidity 50.0 90 > th dose independent rect. 17 6
242 19.53 temperature 10.0 270 > th dose dependent rect. 16 18
258 19.57 wind 9.0 90 < th dose independent rect. 23 18
260 19.58 precipitation 0.1 90 < th dose independent rect. 23 18
263 19.58 precipitation 0.1 90 < th dose dependent rect. 23 18
264 19.60 radiation 20.0 10 < th dose dependent rect. 23 15
267 19.62 wind 1.0 90 > th dose independent rect. 17 6
293 19.68 radiation 10.0 10 < th dose independent rect. 23 17
299 19.70 radiation 10.0 14400 < th dose dependent rect. 19 5
328 19.79 wind 5.0 270 < th dose independent rect. 18 1
349 19.80 precipitation 0.1 90 < th dose independent rect. 17 6
352 19.80 precipitation 0.1 90 < th dose dependent rect. 17 6
360 19.82 humidity 50.0 30 > th dose dependent rect. 18 5
362 19.82 humidity 50.0 30 > th dose dependent rect. 23 19
373 19.85 temperature 15.0 270 > th dose independent rect. 16 18
376 19.85 atmosphere 995.0 90 > th dose dependent rect. 23 18
378 19.86 atmosphere 995.0 30 > th dose independent rect. 7 16
379 19.86 temperature 25.0 270 > th dose independent rect. 15 17
397 19.90 atmosphere 1010.0 270 < th dose independent rect. 15 8
417 19.93 temperature 25.0 90 > th dose dependent rect. 18 12
420 19.94 atmosphere 1015.0 270 < th dose independent rect. 16 18
436 19.96 wind 9.0 270 < th dose independent rect. 16 18
449 19.98 wind 1.0 270 > th dose independent rect. 23 16
455 19.99 atmosphere 1015.0 270 < th dose independent rect. 5 16
456 19.99 radiation 40.0 30 < th dose independent rect. 23 19
460 20.00 radiation 10.0 10 < th dose independent rect. 23 15
487 20.03 wind 1.0 30 > th dose independent rect. 7 16
492 20.03 atmosphere 995.0 270 > th dose dependent rect. 10 6
500 20.04 temperature 10.0 270 > th dose independent rect. 10 6
501 20.04 atmosphere 1015.0 270 < th dose independent rect. 10 6
507 20.05 temperature 10.0 1440 > th dose independent rect. 19 5
510 20.05 temperature 30.0 1440 < th dose independent rect. 19 5
515 20.05 humidity 50.0 1440 > th dose independent rect. 19 5
517 20.05 atmosphere 995.0 1440 > th dose independent rect. 19 5
518 20.05 radiation 1.0 1440 < th dose independent rect. 19 5
538 20.05 atmosphere 995.0 270 > th dose independent rect. 10 6
542 20.05 humidity 50.0 90 > th dose independent rect. 23 18
543 20.05 temperature 10.0 1440 > th dose independent rect. 24 19
552 20.05 wind 9.0 10 < th dose dependent rect. 23 8
571 20.08 precipitation 0.1 270 < th dose independent rect. 10 6
575 20.08 precipitation 0.1 270 < th dose dependent rect. 10 6
582 20.09 wind 5.0 270 < th dose independent rect. 17 3
584 20.09 wind 1.0 270 > th dose independent rect. 10 6
588 20.09 temperature 25.0 270 > th dose dependent rect. 17 15
589 20.10 temperature 30.0 30 < th dose independent rect. 18 5
601 20.11 wind 9.0 270 < th dose independent rect. 10 6
605 20.11 radiation 10.0 90 < th dose independent rect. 23 18
608 20.11 temperature 10.0 10 > th dose dependent rect. 18 18
628 20.15 wind 9.0 1440 < th dose independent rect. 24 8
632 20.16 atmosphere 995.0 270 > th dose dependent rect. 11 4
644 20.18 temperature 25.0 90 > th dose independent rect. 17 13
647 20.18 wind 9.0 30 < th dose dependent rect. 7 16
648 20.19 humidity 60.0 270 > th dose independent rect. 11 4
654 20.19 wind 9.0 270 < th dose independent rect. 5 16
688 20.22 radiation 1.0 270 < th dose independent rect. 20 22
691 20.22 humidity 50.0 30 > th dose dependent rect. 23 8
692 20.22 radiation 1.0 270 < th dose dependent rect. 21 8
704 20.24 radiation 1.0 270 < th dose independent rect. 21 8
720 20.25 temperature 10.0 270 > th dose independent rect. 21 8
721 20.25 temperature 30.0 270 < th dose independent rect. 21 8
722 20.25 humidity 50.0 270 > th dose independent rect. 21 8
725 20.25 atmosphere 995.0 270 > th dose independent rect. 21 8
740 20.26 wind 7.0 270 < th dose independent rect. 21 8
744 20.26 atmosphere 995.0 270 > th dose independent rect. 23 16
754 20.27 temperature 10.0 270 > th dose independent rect. 23 16
782 20.31 radiation 40.0 270 < th dose independent rect. 15 8
789 20.32 wind 9.0 270 < th dose independent rect. 23 16
794 20.32 radiation 1.0 270 < th dose dependent rect. 20 22
797 20.33 precipitation 0.1 270 < th dose independent rect. 21 8
801 20.33 radiation 1.0 270 < th dose independent rect. 21 19
807 20.33 precipitation 0.1 270 < th dose dependent rect. 21 8
813 20.34 wind 1.0 270 > th dose independent rect. 15 8
816 20.34 precipitation 0.1 270 < th dose independent rect. 23 16
825 20.34 precipitation 0.1 270 < th dose dependent rect. 23 16
833 20.35 atmosphere 995.0 270 > th dose independent rect. 16 18
893 20.40 atmosphere 1015.0 90 < th dose independent rect. 23 18
902 20.40 radiation 1.0 270 < th dose dependent rect. 21 19
942 20.44 precipitation 0.1 270 < th dose independent rect. 16 18
948 20.44 precipitation 0.1 270 < th dose dependent rect. 16 18
950 20.45 humidity 90.0 30 < th dose independent rect. 18 5
985 20.48 temperature 30.0 270 < th dose independent rect. 10 5