BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0662600 Os01g0662600|AK119723
(171 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22220.1 | chr4:11759444-11760881 REVERSE LENGTH=168 234 2e-62
AT4G04080.1 | chr4:1963386-1964308 FORWARD LENGTH=172 212 6e-56
AT3G01020.1 | chr3:5139-5893 FORWARD LENGTH=164 199 9e-52
>AT4G22220.1 | chr4:11759444-11760881 REVERSE LENGTH=168
Length = 167
Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 107/128 (83%), Positives = 120/128 (93%)
Query: 32 KAYHERVVDHYENPRNVGSFENDDPSVGTGLVGAPACGDVMKLQIRVDESSGKIVDACFK 91
+ YHE V+DHY+NPRNVGSF+ +DP+VGTGLVGAPACGDVMKLQI+VDE +G+IVDA FK
Sbjct: 27 RTYHENVIDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKVDEKTGQIVDARFK 86
Query: 92 TFGCGSAIASSSVATEWVKGKQMEEVVTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK 151
TFGCGSAIASSSVATEWVKGK ME+V+TIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK
Sbjct: 87 TFGCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK 146
Query: 152 DYEAKKAK 159
DY+ K+ K
Sbjct: 147 DYKEKRVK 154
>AT4G04080.1 | chr4:1963386-1964308 FORWARD LENGTH=172
Length = 171
Score = 212 bits (540), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 116/128 (90%), Gaps = 1/128 (0%)
Query: 32 KAYHERVVDHYENPRNVGSFENDDPSVGTGLVGAPACGDVMKLQIRVDESSGKIVDACFK 91
+ YH V+DHY+NPRNVGSF+ +DP+VGTGLVGAP CGDVMKLQ++ D SG+I+DA FK
Sbjct: 26 RLYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAPQCGDVMKLQVKFD-GSGQIIDAKFK 84
Query: 92 TFGCGSAIASSSVATEWVKGKQMEEVVTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK 151
TFGCGSAIA+SSVATEWVKGK +EEV+TIKN++IAKHLSLPPVKLHCSMLAEDAIKAA+K
Sbjct: 85 TFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIK 144
Query: 152 DYEAKKAK 159
+Y+ K+ K
Sbjct: 145 NYKEKQDK 152
>AT3G01020.1 | chr3:5139-5893 FORWARD LENGTH=164
Length = 163
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 99/140 (70%), Positives = 120/140 (85%), Gaps = 1/140 (0%)
Query: 32 KAYHERVVDHYENPRNVGSFENDDPSVGTGLVGAPACGDVMKLQIRVDESSGKIVDACFK 91
+ YHE V+DH+ENPRNVGSF +DP+VGTGLVGAPACGD+M LQI+VD+S G+I+D FK
Sbjct: 25 RLYHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDDS-GQIIDTRFK 83
Query: 92 TFGCGSAIASSSVATEWVKGKQMEEVVTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK 151
TFGCGSAIASSSVA+EW+KGK ++EV+TIKN EIAKHL LPPVKLHCSMLAEDAIK+AV+
Sbjct: 84 TFGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVR 143
Query: 152 DYEAKKAKLAQKGEEKAAEA 171
DY+ K+AK E+ +A
Sbjct: 144 DYKEKQAKTNAAAAEETVKA 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,066,070
Number of extensions: 114451
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 3
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)