Os01g0660300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate kinase.
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Os01g0660300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.18 | 0.461 | 11.3 | -2.3 | 0.97 | 1.63 | 0.877 | -1.98 | -0.135 | 5.3 | 21.71 | 2580 | -- | -- |
| 98.4 | 0.462 | 11.2 | -1.74 | 0.961 | 1.54 | 0.875 | -- | 0.00514 | 5.2 | 20.5 | 2624 | -- | -- |
| 97.95 | 0.461 | 11.3 | -2.36 | 0.968 | 1.63 | -- | -2.13 | -0.14 | 5.15 | 21.99 | 2650 | -- | -- |
| 99.94 | 0.466 | 11.2 | -1.76 | 0.957 | 1.53 | -- | -- | -0.00408 | 5.03 | 20.55 | 2699 | -- | -- |
| 145.48 | 0.562 | 11.3 | -2.31 | -- | 1.71 | -- | -1.94 | -0.124 | -- | 22.16 | 2702 | -- | -- |
| 170.93 | 0.613 | 11.2 | -1.13 | 1.09 | -- | 0.806 | -- | 0.359 | 4.57 | -- | -- | -- | -- |
| 172.63 | 0.615 | 11.2 | -1.14 | 1.09 | -- | -- | -- | 0.355 | 4.49 | -- | -- | -- | -- |
| 147.39 | 0.565 | 11.3 | -1.75 | -- | 1.63 | -- | -- | 0.0115 | -- | 21.04 | 2703 | -- | -- |
| 167.54 | 0.603 | 11.2 | -- | 1.11 | 1.13 | -- | -- | 0.306 | 5.15 | 22.2 | 2137 | -- | -- |
| 236.31 | 0.718 | 11.2 | -1.09 | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
| 206.6 | 0.672 | 11.1 | -- | 1.07 | -- | -- | -- | 0.481 | 4.52 | -- | -- | -- | -- |
| 211.49 | 0.677 | 11.2 | -- | -- | 1.24 | -- | -- | 0.277 | -- | 22.3 | 1255 | -- | -- |
| 267.81 | 0.764 | 11.1 | -- | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 3 | 95.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 26 | 96.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 28 | 96.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 36 | 96.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 38 | 96.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 44 | 96.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 52 | 97.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 56 | 97.39 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 57 | 97.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 63 | 97.69 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 68 | 97.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 75 | 97.97 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 78 | 98.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 105 | 98.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 114 | 98.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 138 | 98.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 146 | 98.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 163 | 98.88 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 196 | 99.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 212 | 99.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 239 | 99.28 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 254 | 99.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 270 | 99.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 273 | 99.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 292 | 99.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 344 | 99.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 402 | 99.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 447 | 99.93 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 451 | 99.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 499 | 100.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 15 |
| 519 | 100.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 550 | 100.19 | temperature | 20 | 1440 | > th | dose dependent | sin | 6 | NA |
| 554 | 100.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 13 |
| 580 | 100.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 590 | 100.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 11 |
| 595 | 100.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 607 | 100.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 616 | 100.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 629 | 100.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 720 | 100.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 781 | 100.63 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 798 | 100.65 | radiation | 1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 805 | 100.66 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 808 | 100.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 818 | 100.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 821 | 100.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 851 | 100.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 864 | 100.71 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 907 | 100.76 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 952 | 100.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 16 |
| 997 | 100.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 7 |