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Os01g0660200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Acidic class III chitinase OsChib3a precursor (Chitinase) (EC 3.2.1.14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0402) R2 : 0.609
β1 : -2.68 (0.216) R2dD : 0.36 R2D : -0.211
β2 : 1.13 (0.0945) R2dC : 0.13 R2C : 0.139
β3 : -2.7 (0.182) R2dE : 0.611 R2E : 0.0949
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.227 (0.109) R2dN8 : 0.00615 R2N8 : 0.0855
σ : 0.678
deviance : 212.04
__
_____
C
peak time of C : 6.55
E
wheather : temperature
threshold : 34.35
memory length : 30624
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
224.35 0.704 12.7 -1.46 1.12 -2.16 0.272 1.07 0.768 6.58 29.45 4177 -- --
223.44 0.696 12.7 -1.63 1.23 -2.34 0.205 -- 0.689 6.55 34.19 10977 -- --
224.53 0.698 12.7 -1.45 1.11 -2.16 -- 1.06 0.766 6.6 29.4 4153 -- --
212.04 0.678 12.9 -2.68 1.13 -2.7 -- -- 0.227 6.55 34.35 30624 -- --
289.2 0.792 12.7 -1.41 -- -2.25 -- 0.784 0.79 -- 29 4238 -- --
316 0.833 12.6 -0.151 1.18 -- 0.206 -- 1.34 6.19 -- -- -- --
316.1 0.833 12.6 -0.149 1.18 -- -- -- 1.34 6.2 -- -- -- --
280.02 0.779 12.9 -2.7 -- -2.76 -- -- 0.218 -- 44.63 30171 -- --
254.6 0.743 12.6 -- 1.16 -1.66 -- -- 1.12 6.69 56.13 3845 -- --
387.95 0.92 12.6 -0.116 -- -- -- -- 1.37 -- -- -- -- --
316.69 0.832 12.6 -- 1.17 -- -- -- 1.36 6.21 -- -- -- --
318.11 0.831 12.7 -- -- -1.67 -- -- 1.11 -- 58.22 2824 -- --
388.31 0.92 12.6 -- -- -- -- -- 1.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.31 precipitation 0.1 43200 > th dose dependent rect. 3 4
5 202.79 precipitation 0.1 43200 > th dose independent rect. 3 4
6 202.84 precipitation 0.1 43200 < th dose independent rect. 3 4
7 202.84 precipitation 0.1 43200 < th dose dependent rect. 3 4
22 204.24 radiation 1.0 43200 > th dose independent rect. 18 12
23 204.28 humidity 80.0 43200 > th dose independent rect. 15 3
24 204.29 radiation 1.0 14400 > th dose independent rect. 18 22
29 204.47 radiation 1.0 43200 < th dose independent rect. 18 12
35 204.66 humidity 80.0 43200 > th dose independent rect. 14 5
38 204.70 humidity 80.0 43200 > th dose independent rect. 16 1
42 204.91 radiation 1.0 14400 < th dose independent rect. 18 22
44 204.96 humidity 80.0 43200 < th dose independent rect. 16 1
51 205.24 humidity 70.0 43200 > th dose dependent rect. 15 2
52 205.31 radiation 1.0 14400 > th dose independent rect. 4 12
56 205.31 radiation 1.0 14400 < th dose independent rect. 1 15
63 205.32 radiation 1.0 14400 < th dose independent rect. 3 13
93 205.69 radiation 1.0 14400 < th dose independent sin 3 NA
99 205.71 humidity 80.0 43200 < th dose independent rect. 14 5
109 205.80 radiation 1.0 14400 > th dose independent sin 3 NA
132 206.05 radiation 1.0 14400 > th dose independent rect. 7 23
133 206.06 radiation 1.0 14400 < th dose independent rect. 18 19
161 206.23 humidity 70.0 43200 > th dose dependent rect. 14 4
176 206.37 radiation 10.0 43200 > th dose independent rect. 5 1
211 206.44 radiation 1.0 14400 < th dose independent rect. 7 23
252 206.77 precipitation 0.1 43200 > th dose dependent rect. 16 4
253 206.79 radiation 1.0 14400 > th dose independent rect. 7 12
263 206.79 precipitation 0.1 43200 > th dose dependent rect. 18 3
264 206.79 precipitation 0.1 43200 > th dose dependent rect. 23 9
275 206.96 humidity 80.0 43200 < th dose independent rect. 10 9
282 207.01 humidity 80.0 43200 > th dose independent rect. 9 10
286 207.04 radiation 1.0 14400 > th dose independent rect. 14 22
297 207.12 radiation 1.0 14400 > th dose independent no NA NA
348 207.17 radiation 1.0 14400 < th dose independent rect. 14 22
359 207.19 humidity 80.0 43200 < th dose independent rect. 10 1
363 207.24 radiation 1.0 14400 < th dose independent rect. 3 18
366 207.25 radiation 1.0 14400 < th dose independent rect. 4 16
391 207.27 radiation 1.0 14400 < th dose independent no NA NA
392 207.27 radiation 1.0 43200 < th dose independent rect. 17 4
415 207.29 radiation 1.0 43200 < th dose independent rect. 17 9
418 207.30 radiation 1.0 43200 > th dose independent rect. 17 2
439 207.33 radiation 1.0 14400 > th dose independent rect. 11 23
458 207.47 radiation 1.0 14400 < th dose independent rect. 11 23
461 207.50 radiation 1.0 14400 < th dose independent rect. 7 14
462 207.51 humidity 80.0 43200 > th dose independent rect. 10 1
472 207.54 radiation 1.0 14400 < th dose independent rect. 7 19
511 207.65 temperature 20.0 43200 < th dose dependent rect. 5 1
538 207.76 precipitation 0.1 43200 < th dose independent rect. 16 4
540 207.76 precipitation 0.1 43200 < th dose dependent rect. 16 4
545 207.78 precipitation 0.1 43200 > th dose independent rect. 16 4
553 207.81 precipitation 0.1 43200 > th dose dependent rect. 16 1
614 208.08 humidity 90.0 43200 < th dose dependent rect. 17 1
664 208.23 temperature 20.0 43200 < th dose independent rect. 19 1
691 208.30 radiation 1.0 43200 < th dose dependent rect. 18 10
694 208.31 radiation 1.0 43200 < th dose dependent rect. 18 8
729 208.40 radiation 1.0 14400 < th dose dependent rect. 7 23
732 208.41 radiation 1.0 43200 < th dose dependent rect. 18 3
749 208.47 humidity 80.0 43200 > th dose dependent rect. 8 12
775 208.70 wind 3.0 43200 < th dose dependent rect. 3 1
813 208.83 precipitation 0.1 43200 > th dose independent rect. 23 9
824 208.89 precipitation 0.1 43200 < th dose independent rect. 23 9
825 208.89 precipitation 0.1 43200 < th dose dependent rect. 23 9
826 208.92 precipitation 0.1 43200 > th dose dependent rect. 13 7
828 208.94 radiation 1.0 43200 < th dose independent sin 14 NA
840 208.99 radiation 1.0 14400 < th dose dependent rect. 5 23
844 209.00 humidity 70.0 43200 < th dose dependent rect. 22 11
845 209.00 radiation 1.0 14400 < th dose dependent rect. 5 21
856 209.04 radiation 1.0 14400 < th dose dependent rect. 7 19
858 209.05 precipitation 0.1 43200 < th dose independent rect. 16 1
859 209.05 precipitation 0.1 43200 < th dose dependent rect. 16 1
860 209.05 radiation 1.0 14400 < th dose dependent rect. 14 22
861 209.06 precipitation 0.1 43200 > th dose independent rect. 16 1
877 209.10 radiation 40.0 43200 < th dose dependent rect. 18 3
881 209.12 humidity 60.0 43200 < th dose independent rect. 2 7
884 209.13 temperature 30.0 43200 < th dose dependent rect. 5 2
889 209.16 humidity 60.0 43200 < th dose independent rect. 22 11
905 209.20 temperature 10.0 43200 > th dose dependent rect. 5 2
927 209.27 radiation 1.0 14400 < th dose dependent rect. 18 23
946 209.32 radiation 1.0 14400 < th dose dependent rect. 5 16
961 209.37 humidity 60.0 43200 > th dose independent rect. 22 11
963 209.37 radiation 1.0 14400 < th dose dependent rect. 5 7
968 209.39 radiation 1.0 14400 < th dose dependent rect. 23 22
982 209.40 radiation 1.0 14400 < th dose dependent no NA NA
987 209.40 radiation 1.0 14400 < th dose dependent rect. 3 23
997 209.42 radiation 1.0 14400 < th dose dependent rect. 20 23