BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0660200 Os01g0660200|AK100973
         (301 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            321   3e-88

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  321 bits (822), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 147/275 (53%), Positives = 198/275 (72%), Gaps = 2/275 (0%)

Query: 27  GDIAVYWGQNGDEGSLADACNSGLYAYVMVAFLSTFGNGQTPVLNLAGHCEPSSGGCTGQ 86
           G IA+YWGQNG+EG+L+  C +G YAYV VAFL  FGNGQTP LNLAGHC P++  CT  
Sbjct: 30  GGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHF 89

Query: 87  SSDIQTCQSLGVKVILSIGGGAGSYGLSSTQDAQDVADYLWNNFLGGSSGSRPLGDAVLD 146
            S ++ CQS G+KV+LS+GGG G+Y + S +DA+ +ADYLWNNFLGG S SRPLGDAVLD
Sbjct: 90  GSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAVLD 149

Query: 147 GVDFDIETGNPAHYDELATFLSRYSAQGGGKKVILTAAPQCPYPDASLGPALQTGLFDSV 206
           G+DF+IE G+P H+D+LA  LS++S +  G+K+ LT APQCP+PD  +G AL T  FD V
Sbjct: 150 GIDFNIELGSPQHWDDLARTLSKFSHR--GRKIYLTGAPQCPFPDRLMGSALNTKRFDYV 207

Query: 207 WVQFYNNPPCQYANGDASNLVSAWNTWTGGVSAGSFYXXXXXXXXXXXXXXXXPGDLTSA 266
           W+QFYNNPPC Y++G+  NL  +WN WT  ++A  F+                P  LTS 
Sbjct: 208 WIQFYNNPPCSYSSGNTQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVLTSQ 267

Query: 267 VLPAVQGNAKYGGIMVWNRFYDVQNNFSNQVKSSV 301
           +LP ++ + KYGG+M+W++F+D +N +S+ + +SV
Sbjct: 268 ILPTLKKSRKYGGVMLWSKFWDDKNGYSSSILASV 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,413,136
Number of extensions: 272419
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,419,801
Effective search space: 1709219603
Effective search space used: 1709219603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)