Os01g0655300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trithorax 4 (Fragment).
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Os01g0655300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trithorax 4 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.67 | 0.198 | 10.1 | -0.754 | 0.344 | 0.452 | -0.309 | 0.463 | -0.0577 | 9 | 1010 | 6542 | -- | -- |
| 18.1 | 0.198 | 10.1 | -0.652 | 0.347 | 0.425 | -0.291 | -- | -0.0368 | 8.99 | 1010 | 5882 | -- | -- |
| 17.97 | 0.197 | 10.1 | -0.765 | 0.347 | 0.465 | -- | 0.509 | -0.0537 | 9 | 1010 | 6804 | -- | -- |
| 18.41 | 0.2 | 10.1 | -0.658 | 0.347 | 0.421 | -- | -- | -0.04 | 9.08 | 1010 | 5840 | -- | -- |
| 24.82 | 0.232 | 10.1 | -0.777 | -- | 0.462 | -- | 0.542 | -0.0571 | -- | 1010 | 6649 | -- | -- |
| 23.33 | 0.226 | 10.1 | -0.792 | 0.344 | -- | -0.269 | -- | -0.129 | 9.17 | -- | -- | -- | -- |
| 23.59 | 0.227 | 10.1 | -0.801 | 0.345 | -- | -- | -- | -0.129 | 9.24 | -- | -- | -- | -- |
| 25.4 | 0.235 | 10.1 | -0.657 | -- | 0.418 | -- | -- | -0.0364 | -- | 1010 | 6066 | -- | -- |
| 20.72 | 0.212 | 10 | -- | 0.34 | 0.701 | -- | -- | 0.176 | 9.06 | 1009 | 47520 | -- | -- |
| 30.48 | 0.258 | 10.1 | -0.803 | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
| 40.5 | 0.298 | 10.1 | -- | 0.345 | -- | -- | -- | -0.0394 | 9.41 | -- | -- | -- | -- |
| 27.2 | 0.243 | 10.1 | -- | -- | 0.736 | -- | -- | 0.193 | -- | 1009 | 47520 | -- | -- |
| 47.47 | 0.322 | 10.1 | -- | -- | -- | -- | -- | -0.038 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.05 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 2 | 17.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 4 | 17.11 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 7 | 17.15 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 8 | 17.16 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 33 | 17.19 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 37 | 17.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 41 | 17.23 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 47 | 17.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 48 | 17.25 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 51 | 17.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 55 | 17.27 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 56 | 17.27 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 60 | 17.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 61 | 17.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 64 | 17.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 75 | 17.30 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 87 | 17.32 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 93 | 17.33 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 115 | 17.34 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 119 | 17.34 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 121 | 17.35 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 158 | 17.37 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 165 | 17.37 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 170 | 17.38 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 173 | 17.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 174 | 17.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 180 | 17.38 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 202 | 17.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 232 | 17.40 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 244 | 17.42 | radiation | 10.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 253 | 17.43 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 281 | 17.43 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 303 | 17.44 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 313 | 17.45 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 334 | 17.46 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 382 | 17.49 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 384 | 17.49 | wind | 5.0 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 400 | 17.51 | wind | 5.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 408 | 17.51 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 411 | 17.51 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 417 | 17.52 | wind | 5.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 419 | 17.52 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 440 | 17.52 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 446 | 17.53 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 460 | 17.53 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 461 | 17.54 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 462 | 17.54 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 470 | 17.54 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 478 | 17.55 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 482 | 17.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 491 | 17.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 542 | 17.56 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 544 | 17.56 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 4 | 7 |
| 553 | 17.57 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 554 | 17.57 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 573 | 17.57 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 4 | 10 |
| 581 | 17.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 615 | 17.59 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 651 | 17.60 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 665 | 17.61 | radiation | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 674 | 17.61 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 683 | 17.61 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 734 | 17.62 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 758 | 17.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 770 | 17.63 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 773 | 17.63 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 816 | 17.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 900 | 17.65 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 920 | 17.65 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 959 | 17.66 | temperature | 10.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 963 | 17.66 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 972 | 17.66 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 973 | 17.66 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 986 | 17.66 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 14 |