BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0655300 Os01g0655300|AK062870
         (52 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27910.1  | chr4:13894694-13900256 FORWARD LENGTH=1028          91   1e-19
AT5G53430.1  | chr5:21677623-21683166 FORWARD LENGTH=1044          87   2e-18
AT3G61740.1  | chr3:22851133-22856548 REVERSE LENGTH=1019          79   4e-16

>AT4G27910.1 | chr4:13894694-13900256 FORWARD LENGTH=1028
          Length = 1027

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 46/52 (88%)

Query: 1    VGHDESRIVLIAKKNVSAGEELTYDYLFDPDEADDRKVPCLCQTANCRKFMN 52
            VG +ESRIVLIAK NV+ GEELTYDYLFDPDEA++ KVPCLC+  NCRKFMN
Sbjct: 976  VGDEESRIVLIAKANVAVGEELTYDYLFDPDEAEELKVPCLCKAPNCRKFMN 1027



>AT5G53430.1 | chr5:21677623-21683166 FORWARD LENGTH=1044
          Length = 1043

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 45/52 (86%)

Query: 1    VGHDESRIVLIAKKNVSAGEELTYDYLFDPDEADDRKVPCLCQTANCRKFMN 52
            VG DESRIVLIAK  V++ EELTYDYLFDPDE D+ KVPCLC++ NCRKFMN
Sbjct: 992  VGDDESRIVLIAKTTVASCEELTYDYLFDPDEPDEFKVPCLCKSPNCRKFMN 1043



>AT3G61740.1 | chr3:22851133-22856548 REVERSE LENGTH=1019
          Length = 1018

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 44/49 (89%)

Query: 4    DESRIVLIAKKNVSAGEELTYDYLFDPDEADDRKVPCLCQTANCRKFMN 52
            +++RIVLIAK NV+AGEELTYDYLF+ DE+++ KVPCLC+  NCRKFMN
Sbjct: 970  EDNRIVLIAKTNVAAGEELTYDYLFEVDESEEIKVPCLCKAPNCRKFMN 1018



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,200,178
Number of extensions: 34508
Number of successful extensions: 87
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 3
Length of query: 52
Length of database: 11,106,569
Length adjustment: 25
Effective length of query: 27
Effective length of database: 10,421,169
Effective search space: 281371563
Effective search space used: 281371563
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)