Os01g0653800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0653800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.6 | 0.228 | 10.3 | 1.32 | 0.267 | 0.548 | 0.164 | -0.903 | 0.475 | 21.5 | 91.39 | 351 | -- | -- |
| 24.56 | 0.231 | 10.3 | 1.28 | 0.279 | 0.584 | 0.413 | -- | 0.474 | 20.8 | 91.78 | 357 | -- | -- |
| 23.58 | 0.226 | 10.3 | 1.32 | 0.255 | 0.564 | -- | -0.984 | 0.463 | 21.8 | 92.19 | 354 | -- | -- |
| 25.01 | 0.233 | 10.3 | 1.27 | 0.267 | 0.571 | -- | -- | 0.459 | 21.9 | 92.51 | 360 | -- | -- |
| 27.24 | 0.243 | 10.3 | 1.32 | -- | 0.473 | -- | -1.07 | 0.458 | -- | 92.23 | 312 | -- | -- |
| 28.75 | 0.251 | 10.4 | 1.31 | 0.226 | -- | -0.000506 | -- | 0.39 | 0.375 | -- | -- | -- | -- |
| 28.75 | 0.251 | 10.4 | 1.31 | 0.226 | -- | -- | -- | 0.39 | 0.374 | -- | -- | -- | -- |
| 28.59 | 0.249 | 10.3 | 1.28 | -- | 0.396 | -- | -- | 0.445 | -- | 91.85 | 239 | -- | -- |
| 67 | 0.381 | 10.4 | -- | 0.339 | 0.741 | -- | -- | 0.377 | 21.2 | 91.28 | 387 | -- | -- |
| 31.96 | 0.264 | 10.3 | 1.32 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 74.12 | 0.403 | 10.4 | -- | 0.246 | -- | -- | -- | 0.243 | 0.65 | -- | -- | -- | -- |
| 71.3 | 0.393 | 10.4 | -- | -- | 0.477 | -- | -- | 0.328 | -- | 90 | 257 | -- | -- |
| 77.9 | 0.412 | 10.4 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.96 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 13 |
| 10 | 24.01 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 12 | 24.01 | humidity | 90 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 15 | 24.03 | humidity | 90 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 26 | 24.07 | humidity | 90 | 270 | > th | dose dependent | sin | 7 | NA |
| 86 | 24.20 | humidity | 90 | 270 | > th | dose dependent | no | NA | NA |
| 103 | 24.25 | humidity | 90 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 107 | 24.28 | humidity | 90 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 120 | 24.35 | humidity | 90 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 158 | 24.56 | temperature | 20 | 90 | > th | dose dependent | sin | 5 | NA |
| 189 | 24.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 192 | 24.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 200 | 24.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 207 | 24.81 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 220 | 24.85 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 12 |
| 225 | 24.87 | humidity | 90 | 270 | > th | dose independent | rect. | 23 | 14 |
| 261 | 24.97 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 10 |
| 263 | 24.98 | humidity | 90 | 270 | > th | dose independent | sin | 7 | NA |
| 296 | 25.04 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 11 |
| 372 | 25.17 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 14 |
| 373 | 25.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 395 | 25.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 424 | 25.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 439 | 25.27 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 461 | 25.30 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 11 |
| 488 | 25.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 505 | 25.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 522 | 25.36 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 543 | 25.38 | humidity | 90 | 270 | < th | dose independent | rect. | 24 | 12 |
| 625 | 25.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 17 |
| 662 | 25.51 | humidity | 90 | 10 | < th | dose independent | sin | 2 | NA |
| 663 | 25.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 672 | 25.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 681 | 25.52 | humidity | 90 | 270 | < th | dose independent | sin | 5 | NA |
| 951 | 25.73 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 6 |
| 963 | 25.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |