Os01g0640700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0640700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 205.28 | 0.673 | 7.06 | -2.52 | 1.16 | 1.7 | -0.479 | -4.65 | -0.615 | 7.47 | 29.19 | 5658 | -- | -- |
| 210.4 | 0.676 | 6.93 | -1.47 | 1.21 | 1.36 | -0.41 | -- | -0.441 | 7.67 | 28.66 | 5619 | -- | -- |
| 205.84 | 0.668 | 7.07 | -2.61 | 1.16 | 1.75 | -- | -4.99 | -0.617 | 7.51 | 29.17 | 5643 | -- | -- |
| 208.99 | 0.673 | 6.94 | -1.56 | 1.19 | 1.18 | -- | -- | -0.497 | 7.56 | 29.32 | 5660 | -- | -- |
| 276.44 | 0.774 | 7.07 | -2.55 | -- | 1.78 | -- | -5.31 | -0.54 | -- | 29.84 | 5691 | -- | -- |
| 280.19 | 0.785 | 6.97 | -1.15 | 1.24 | -- | -0.642 | -- | -0.669 | 7.23 | -- | -- | -- | -- |
| 281.3 | 0.785 | 6.97 | -1.16 | 1.24 | -- | -- | -- | -0.668 | 7.23 | -- | -- | -- | -- |
| 282.87 | 0.783 | 6.97 | -1.52 | -- | 1.23 | -- | -- | -0.493 | -- | 29.5 | 5728 | -- | -- |
| 266.51 | 0.76 | 6.9 | -- | 1.19 | 0.964 | -- | -- | -0.343 | 7.6 | 30.4 | 5635 | -- | -- |
| 363.09 | 0.89 | 7 | -1.14 | -- | -- | -- | -- | -0.647 | -- | -- | -- | -- | -- |
| 316.85 | 0.833 | 6.94 | -- | 1.23 | -- | -- | -- | -0.539 | 7.29 | -- | -- | -- | -- |
| 324.18 | 0.839 | 6.99 | -- | -- | 1.01 | -- | -- | -0.566 | -- | 33.59 | 7001 | -- | -- |
| 397.33 | 0.93 | 6.97 | -- | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 214.05 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 18 |
| 2 | 214.33 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 4 | 214.45 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 5 | 214.55 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 11 | 215.12 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 12 | 215.24 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 13 | 215.38 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 19 | 215.60 | temperature | 30.0 | 720 | > th | dose independent | rect. | 14 | 21 |
| 27 | 216.21 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 33 | 216.37 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 48 | 216.48 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 65 | 216.52 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 103 | 216.73 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 116 | 216.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 123 | 216.87 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 156 | 216.91 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 321 | 217.21 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 328 | 217.25 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 335 | 217.28 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 336 | 217.28 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 364 | 217.38 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 377 | 217.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 379 | 217.55 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 398 | 217.75 | temperature | 30.0 | 720 | > th | dose independent | sin | 11 | NA |
| 405 | 217.82 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 423 | 217.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 428 | 217.90 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 445 | 217.98 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 451 | 218.00 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 468 | 218.07 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 470 | 218.08 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 475 | 218.10 | temperature | 30.0 | 720 | > th | dose independent | sin | 17 | NA |
| 481 | 218.13 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 526 | 218.32 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 21 |
| 536 | 218.35 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 568 | 218.48 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 569 | 218.49 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 573 | 218.52 | temperature | 30.0 | 720 | < th | dose independent | sin | 11 | NA |
| 575 | 218.52 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 580 | 218.55 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 596 | 218.61 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 672 | 218.76 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 10 |
| 716 | 218.85 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 757 | 219.00 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 21 | NA |
| 814 | 219.14 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 837 | 219.19 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 19 |
| 842 | 219.20 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 14 |
| 862 | 219.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 897 | 219.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 910 | 219.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 23 |
| 960 | 219.40 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 978 | 219.42 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 992 | 219.44 | temperature | 30.0 | 1440 | < th | dose independent | sin | 18 | NA |