BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0640700 Os01g0640700|J075057J21
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36330.1  | chr2:15233620-15235298 FORWARD LENGTH=284           55   1e-08
AT5G62820.1  | chr5:25223828-25224898 REVERSE LENGTH=298           52   4e-08

>AT2G36330.1 | chr2:15233620-15235298 FORWARD LENGTH=284
          Length = 283

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query: 25  QVLAYLLMXXXXXXXXRNDLWMSSFGKDPFNKKINSAVWFSFIAFIGLATNSLISTANLF 84
           QVLAYLLM        R D W+S++GKD F +  ++++  SF+AF+  A +SLIS  NLF
Sbjct: 219 QVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLF 278

Query: 85  SM 86
           + 
Sbjct: 279 NQ 280



>AT5G62820.1 | chr5:25223828-25224898 REVERSE LENGTH=298
          Length = 297

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 17  HLIFLVSL-QVLAYLLMXXXXXXXXRNDLWMSSFGKDPFNKKINSAVWFSFIAFIGLATN 75
           H +F+ S+ Q+LAYLLM        R D W+S++GKD F +   +++  SF+AF   A +
Sbjct: 224 HDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKDEFTQMATASIAVSFLAFGAFAVS 283

Query: 76  SLISTANLFS 85
           +LIS+  LF+
Sbjct: 284 ALISSYRLFT 293



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,510,362
Number of extensions: 41039
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)