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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0640200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : von Willebrand factor, type A domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0469) R2 : 0.104
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.67 (0.259) R2dE : 0.0831 R2E : 0.0853
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.256 (0.099) R2dN8 : 0.0185 R2N8 : 0.0207
σ : 0.88
deviance : 356.78
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.84
memory length : 7
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 1.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.07 0.877 3.04 -0.00647 0.305 2.19 -0.512 -5.79 -0.269 5.45 0.8398 10 17 1.02
352.9 0.875 3.03 0.104 0.275 1.81 -0.133 -- -0.251 5.06 0.8273 7 17 1.02
348.6 0.87 3.04 -0.00235 0.302 2.17 -- -5.31 -0.267 4.98 0.8364 9 17 1.03
352.91 0.875 3.03 0.104 0.267 1.81 -- -- -0.256 4.86 0.8399 7 17 1.01
353.12 0.875 3.05 -0.0431 -- 2.02 -- -5.19 -0.277 -- 0.84 9 17 1
388.26 0.924 3.05 0.144 0.0522 -- 0.408 -- -0.312 21.3 -- -- -- --
388.62 0.923 3.05 0.127 0.0798 -- -- -- -0.315 1.09 -- -- -- --
356.42 0.879 3.04 0.116 -- 1.67 -- -- -0.254 -- 0.8317 7 17 1
353.2 0.875 3.03 -- 0.268 1.82 -- -- -0.265 4.86 0.8398 7 17 1.02
389.02 0.922 3.05 0.13 -- -- -- -- -0.313 -- -- -- -- --
389.04 0.923 3.05 -- 0.0819 -- -- -- -0.329 1.16 -- -- -- --
356.78 0.88 3.04 -- -- 1.67 -- -- -0.256 -- 0.84 7 17 1.01
389.46 0.921 3.05 -- -- -- -- -- -0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 352.57 radiation 1.0 10 > th dose independent rect. 17 1
2 354.09 radiation 1.0 270 < th dose dependent rect. 6 1
3 354.58 temperature 25.0 10 > th dose independent rect. 17 1
4 355.54 atmosphere 1005.0 10 < th dose dependent rect. 17 1
31 358.24 temperature 20.0 270 < th dose independent rect. 6 1
33 358.97 wind 1.0 90 > th dose independent rect. 3 3
36 359.64 atmosphere 1005.0 270 < th dose independent rect. 6 1
60 361.74 temperature 25.0 90 < th dose dependent rect. 7 2
62 361.99 atmosphere 995.0 270 > th dose independent rect. 3 23
70 362.60 atmosphere 1005.0 90 < th dose independent rect. 6 4
77 362.81 atmosphere 1005.0 10 < th dose independent rect. 7 3
85 363.38 temperature 30.0 30 < th dose dependent rect. 3 4
88 363.59 atmosphere 1005.0 10 < th dose independent rect. 16 3
93 363.71 temperature 20.0 10 < th dose independent rect. 3 20
96 363.83 radiation 1.0 270 < th dose independent rect. 6 1
111 364.11 temperature 20.0 90 < th dose independent rect. 2 4
121 364.30 atmosphere 995.0 270 > th dose independent rect. 14 11
141 364.83 atmosphere 1005.0 10 < th dose independent rect. 16 6
142 364.91 atmosphere 995.0 30 > th dose independent rect. 7 20
144 364.99 humidity 90.0 270 > th dose dependent rect. 6 2
154 365.30 temperature 20.0 90 < th dose independent rect. 2 20
156 365.40 temperature 30.0 270 < th dose dependent rect. 2 1
171 365.77 radiation 1.0 30 < th dose dependent rect. 7 1
175 365.78 humidity 80.0 30 > th dose independent rect. 3 4
176 365.81 humidity 70.0 10 > th dose dependent rect. 3 4
193 366.26 atmosphere 995.0 720 > th dose independent rect. 15 17
195 366.29 atmosphere 1000.0 30 > th dose independent rect. 3 4
200 366.41 temperature 20.0 10 > th dose dependent rect. 17 1
205 366.55 precipitation 0.1 720 < th dose independent rect. 20 7
207 366.55 precipitation 0.1 720 < th dose dependent rect. 20 7
208 366.56 temperature 30.0 720 < th dose independent rect. 20 15
209 366.60 wind 7.0 1440 < th dose independent rect. 3 4
214 366.72 precipitation 0.1 30 < th dose independent rect. 3 4
215 366.72 precipitation 0.1 30 < th dose dependent rect. 3 4
221 366.79 radiation 10.0 10 < th dose dependent rect. 3 12
223 366.82 wind 9.0 30 < th dose independent rect. 7 20
231 366.90 temperature 25.0 270 < th dose independent rect. 2 1
246 367.05 atmosphere 995.0 720 > th dose independent rect. 20 22
255 367.12 wind 3.0 30 < th dose independent rect. 3 4
277 367.32 radiation 30.0 30 < th dose dependent rect. 3 4
282 367.34 temperature 30.0 30 < th dose independent rect. 7 20
298 367.50 atmosphere 995.0 90 > th dose independent rect. 6 13
300 367.51 wind 9.0 30 < th dose independent rect. 3 4
301 367.51 temperature 10.0 30 > th dose independent rect. 3 4
304 367.51 humidity 50.0 30 > th dose independent rect. 3 4
308 367.51 atmosphere 1015.0 30 < th dose independent rect. 3 4
309 367.51 radiation 20.0 30 < th dose independent rect. 3 4
312 367.51 temperature 10.0 30 > th dose independent rect. 7 20
316 367.53 radiation 1.0 720 < th dose independent rect. 17 3
329 367.71 wind 9.0 720 < th dose independent rect. 20 7
347 367.77 temperature 30.0 30 < th dose dependent rect. 18 13
372 368.06 radiation 1.0 720 < th dose dependent rect. 17 3
383 368.13 atmosphere 995.0 720 > th dose independent rect. 3 17
385 368.16 wind 9.0 30 < th dose dependent rect. 3 4
388 368.21 temperature 30.0 90 > th dose independent rect. 16 17
417 368.40 atmosphere 995.0 10 > th dose independent rect. 7 12
423 368.46 temperature 20.0 30 < th dose dependent rect. 4 18
426 368.47 atmosphere 995.0 30 > th dose dependent rect. 3 4
429 368.51 radiation 40.0 720 < th dose dependent rect. 6 2
433 368.53 radiation 1.0 720 < th dose dependent rect. 20 7
438 368.55 temperature 10.0 720 > th dose independent rect. 20 7
439 368.55 temperature 30.0 720 < th dose independent rect. 20 7
440 368.55 humidity 50.0 720 > th dose independent rect. 20 7
443 368.55 atmosphere 995.0 720 > th dose independent rect. 20 7
444 368.55 radiation 1.0 720 < th dose independent rect. 20 7
449 368.55 temperature 10.0 720 > th dose independent rect. 3 17
450 368.55 wind 1.0 90 > th dose dependent rect. 4 1
455 368.56 atmosphere 995.0 30 > th dose independent rect. 15 12
468 368.65 temperature 30.0 90 < th dose independent rect. 15 11
479 368.74 precipitation 0.1 720 < th dose independent rect. 20 22
482 368.74 precipitation 0.1 720 < th dose dependent rect. 20 22
485 368.75 radiation 1.0 10 < th dose dependent rect. 5 21
486 368.77 wind 1.0 10 > th dose independent rect. 7 12
520 368.90 radiation 10.0 10 < th dose independent rect. 3 12
530 368.95 wind 1.0 90 > th dose independent rect. 19 11
562 369.01 temperature 10.0 720 > th dose independent rect. 8 7
563 369.01 atmosphere 1015.0 720 < th dose independent rect. 8 7
564 369.01 temperature 10.0 720 > th dose independent rect. 15 17
570 369.02 precipitation 0.1 30 < th dose independent rect. 7 20
573 369.02 precipitation 0.1 30 < th dose dependent rect. 7 20
574 369.03 wind 1.0 720 > th dose independent rect. 18 2
580 369.06 precipitation 0.1 720 < th dose independent rect. 18 2
583 369.06 precipitation 0.1 720 < th dose dependent rect. 18 2
585 369.07 temperature 30.0 90 < th dose independent rect. 6 13
600 369.20 wind 9.0 10 < th dose independent rect. 7 12
601 369.20 wind 9.0 90 < th dose independent rect. 6 13
608 369.24 wind 1.0 270 > th dose dependent rect. 2 1
612 369.25 atmosphere 995.0 720 > th dose independent rect. 8 22
614 369.26 wind 9.0 720 < th dose independent rect. 15 17
634 369.32 radiation 1.0 10 < th dose dependent rect. 11 15
642 369.33 radiation 40.0 90 < th dose dependent rect. 12 18
644 369.34 radiation 1.0 10 < th dose dependent rect. 13 13
651 369.36 radiation 1.0 10 < th dose dependent rect. 15 11
654 369.37 wind 7.0 10 < th dose independent rect. 7 5
666 369.44 atmosphere 1015.0 270 < th dose dependent rect. 7 1
678 369.49 radiation 40.0 720 < th dose independent rect. 14 18
679 369.49 humidity 50.0 720 > th dose dependent rect. 6 2
680 369.50 atmosphere 1000.0 270 > th dose independent rect. 2 1
692 369.54 radiation 40.0 90 < th dose independent rect. 12 18
693 369.54 wind 9.0 270 < th dose independent rect. 3 23
696 369.57 radiation 1.0 30 < th dose independent rect. 11 15
701 369.58 radiation 1.0 30 < th dose independent rect. 13 13
705 369.59 atmosphere 1000.0 90 > th dose independent rect. 19 11
706 369.59 radiation 1.0 30 < th dose independent rect. 15 11
710 369.60 atmosphere 1015.0 90 < th dose dependent rect. 6 5
711 369.61 atmosphere 1000.0 720 > th dose independent rect. 18 2
715 369.62 precipitation 0.1 90 < th dose independent rect. 6 13
717 369.62 precipitation 0.1 90 < th dose dependent rect. 6 13
718 369.64 wind 9.0 720 < th dose independent rect. 20 22
723 369.68 temperature 20.0 10 < th dose independent rect. 3 11
747 369.79 wind 1.0 10 > th dose independent rect. 24 7
748 369.79 temperature 20.0 10 > th dose independent rect. 21 15
752 369.80 humidity 90.0 270 > th dose independent rect. 6 1
753 369.80 atmosphere 995.0 720 > th dose independent rect. 6 10
759 369.82 atmosphere 1005.0 10 < th dose independent rect. 8 1
776 369.87 precipitation 0.1 90 < th dose independent rect. 19 11
777 369.87 precipitation 0.1 10 < th dose independent rect. 19 12
778 369.87 precipitation 0.1 90 < th dose dependent rect. 19 11
779 369.87 precipitation 0.1 10 < th dose dependent rect. 19 12
786 369.91 radiation 20.0 90 < th dose independent rect. 12 18
838 369.98 radiation 40.0 720 < th dose independent rect. 14 2
845 369.99 humidity 60.0 270 > th dose dependent rect. 2 1
866 370.09 temperature 30.0 10 < th dose dependent rect. 24 7
875 370.12 atmosphere 1015.0 30 < th dose independent rect. 7 20
878 370.13 wind 9.0 720 < th dose independent rect. 20 15
880 370.14 precipitation 0.1 720 < th dose independent rect. 8 7
881 370.14 atmosphere 995.0 720 > th dose independent rect. 4 14
883 370.14 precipitation 0.1 720 < th dose dependent rect. 8 7
887 370.16 precipitation 0.1 10 < th dose independent rect. 12 19
888 370.16 atmosphere 1010.0 10 < th dose dependent rect. 7 3
889 370.16 precipitation 0.1 10 < th dose dependent rect. 12 19
892 370.19 temperature 10.0 720 > th dose independent rect. 18 2
893 370.19 humidity 50.0 720 > th dose independent rect. 18 2
894 370.19 atmosphere 1015.0 720 < th dose independent rect. 18 2
895 370.19 radiation 20.0 720 < th dose independent rect. 18 2
899 370.19 temperature 10.0 720 > th dose independent rect. 20 22
900 370.19 temperature 30.0 90 < th dose dependent rect. 12 18
901 370.20 atmosphere 1005.0 10 < th dose independent rect. 16 19
907 370.22 radiation 40.0 720 < th dose dependent rect. 18 2
913 370.25 atmosphere 995.0 720 > th dose independent rect. 8 7
916 370.26 atmosphere 1000.0 10 > th dose independent rect. 19 12
935 370.32 wind 9.0 720 < th dose independent rect. 6 2
936 370.32 temperature 10.0 720 > th dose independent rect. 6 2
937 370.32 temperature 30.0 720 < th dose independent rect. 6 2
938 370.32 humidity 50.0 720 > th dose independent rect. 6 2
940 370.32 atmosphere 995.0 720 > th dose independent rect. 6 2
941 370.32 atmosphere 1015.0 720 < th dose independent rect. 6 2
942 370.32 temperature 10.0 720 > th dose independent rect. 8 22
945 370.33 humidity 80.0 270 > th dose independent rect. 2 1
951 370.34 temperature 30.0 720 < th dose independent rect. 18 2
958 370.37 radiation 1.0 720 < th dose independent rect. 17 12
968 370.40 wind 9.0 720 < th dose independent rect. 18 2
974 370.41 temperature 10.0 90 > th dose independent rect. 19 11
975 370.41 temperature 30.0 90 < th dose independent rect. 19 11
976 370.41 humidity 50.0 90 > th dose independent rect. 19 11
979 370.41 radiation 20.0 90 < th dose independent rect. 19 11
982 370.41 temperature 10.0 90 > th dose independent rect. 6 13
983 370.41 atmosphere 1015.0 90 < th dose independent rect. 6 13
985 370.42 precipitation 0.1 720 < th dose independent rect. 6 2
987 370.42 precipitation 0.1 720 < th dose dependent rect. 6 2