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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0630300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0547) R2 : 0.0152
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.305 (0.115) R2dN8 : 0.0196 R2N8 : 0.0152
σ : 1.03
deviance : 487.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
449.64 0.996 3.62 -1.45 0.284 1.21 0.247 -3.71 -0.84 8.36 26.55 951 -- --
458.99 0.998 3.51 -0.592 0.176 0.97 0.831 -- -0.569 9.41 26.6 1012 -- --
449.8 0.988 3.62 -1.48 0.285 1.21 -- -3.87 -0.849 8.2 26.56 949 -- --
461.43 1 3.51 -0.581 0.217 0.939 -- -- -0.552 8.98 26.5 965 -- --
452.6 0.991 3.63 -1.46 -- 1.14 -- -3.77 -0.84 -- 26.56 1049 -- --
482.34 1.03 3.47 -0.294 0.156 -- -0.541 -- -0.339 24 -- -- -- --
483.43 1.03 3.47 -0.274 0.168 -- -- -- -0.338 1.35 -- -- -- --
462.41 1 3.51 -0.539 -- 0.892 -- -- -0.541 -- 26.68 1108 -- --
468.63 1.01 3.49 -- 0.166 0.779 -- -- -0.465 8.21 26.6 971 -- --
485.18 1.03 3.46 -0.268 -- -- -- -- -0.335 -- -- -- -- --
485.41 1.03 3.46 -- 0.164 -- -- -- -0.308 1.29 -- -- -- --
469.42 1.01 3.49 -- -- 0.737 -- -- -0.449 -- 26.66 1060 -- --
487.07 1.03 3.46 -- -- -- -- -- -0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 448.66 temperature 25 720 > th dose dependent rect. 16 7
5 449.11 temperature 25 720 > th dose dependent rect. 16 16
19 450.35 temperature 25 720 > th dose dependent sin 13 NA
20 450.46 temperature 25 720 > th dose dependent rect. 17 3
34 451.33 temperature 25 270 > th dose independent rect. 18 6
35 451.59 temperature 25 720 > th dose independent rect. 16 7
52 452.86 temperature 25 720 > th dose independent rect. 17 3
59 453.10 temperature 25 720 < th dose independent rect. 17 6
75 454.00 wind 3 10 < th dose dependent rect. 18 1
79 454.07 radiation 1 720 < th dose dependent rect. 18 8
95 454.44 radiation 1 720 > th dose dependent rect. 18 1
119 454.85 wind 3 43200 < th dose independent rect. 11 1
121 454.89 wind 1 43200 > th dose dependent rect. 8 7
124 454.93 wind 3 43200 > th dose independent rect. 9 5
127 454.97 wind 9 43200 < th dose dependent rect. 8 7
128 454.97 temperature 25 720 > th dose dependent rect. 11 14
129 454.98 wind 3 43200 > th dose independent rect. 11 1
131 454.99 wind 3 43200 < th dose independent rect. 9 4
136 455.04 wind 1 43200 > th dose dependent rect. 11 3
138 455.05 wind 9 43200 < th dose dependent rect. 10 4
147 455.09 wind 3 43200 < th dose independent rect. 8 6
150 455.09 temperature 25 720 > th dose dependent rect. 11 20
161 455.15 wind 1 43200 > th dose dependent rect. 12 1
169 455.24 wind 9 43200 < th dose dependent rect. 12 1
187 455.38 wind 5 43200 < th dose dependent rect. 11 1
193 455.44 wind 7 43200 > th dose dependent rect. 7 10
194 455.45 wind 7 43200 > th dose dependent rect. 5 12
198 455.49 wind 3 43200 > th dose dependent rect. 7 10
204 455.53 wind 7 43200 > th dose dependent rect. 5 15
205 455.55 wind 3 43200 > th dose dependent rect. 5 13
209 455.56 wind 7 43200 > th dose dependent rect. 7 13
212 455.59 temperature 25 1440 < th dose independent rect. 22 1
213 455.59 humidity 90 43200 > th dose dependent rect. 18 1
246 455.73 wind 3 43200 > th dose dependent sin 0 NA
247 455.73 wind 7 43200 > th dose dependent sin 0 NA
249 455.73 wind 7 43200 > th dose dependent rect. 24 17
250 455.73 wind 7 43200 > th dose dependent rect. 2 18
255 455.75 humidity 90 43200 > th dose dependent rect. 14 9
256 455.76 humidity 90 43200 > th dose independent rect. 18 1
257 455.76 temperature 25 720 > th dose independent rect. 10 14
261 455.77 wind 7 43200 > th dose dependent rect. 24 20
276 455.83 humidity 90 43200 > th dose dependent rect. 17 6
285 455.85 humidity 90 43200 > th dose dependent rect. 18 3
308 455.94 wind 9 43200 < th dose independent rect. 18 22
332 456.00 humidity 90 43200 > th dose dependent rect. 20 1
338 456.02 temperature 25 1440 > th dose independent rect. 22 1
384 456.15 wind 9 43200 > th dose independent rect. 18 22
391 456.18 wind 9 43200 > th dose independent rect. 13 20
394 456.18 wind 7 43200 > th dose dependent rect. 12 21
398 456.20 humidity 90 43200 < th dose independent rect. 22 1
407 456.22 wind 9 43200 < th dose independent rect. 13 20
413 456.24 humidity 80 43200 > th dose independent rect. 7 8
435 456.27 wind 9 43200 < th dose independent rect. 7 9
436 456.27 humidity 80 43200 > th dose independent rect. 6 11
445 456.28 wind 3 43200 > th dose dependent rect. 7 16
458 456.30 wind 7 43200 > th dose dependent rect. 5 20
459 456.31 wind 9 43200 < th dose independent rect. 22 18
471 456.32 temperature 25 1440 > th dose dependent rect. 18 19
473 456.33 wind 9 43200 < th dose independent rect. 24 16
492 456.36 wind 9 43200 < th dose independent rect. 5 11
500 456.37 wind 9 43200 > th dose independent rect. 8 8
508 456.37 wind 7 43200 > th dose dependent rect. 18 23
521 456.39 wind 9 43200 < th dose independent rect. 2 14
538 456.40 wind 9 43200 < th dose dependent sin 1 NA
556 456.42 temperature 25 720 > th dose independent sin 17 NA
571 456.44 humidity 90 43200 > th dose independent rect. 14 9
598 456.48 temperature 25 720 > th dose dependent rect. 21 1
618 456.50 wind 7 43200 > th dose independent rect. 23 18
622 456.51 humidity 80 43200 < th dose independent rect. 8 7
650 456.56 radiation 10 14400 > th dose independent rect. 5 1
691 456.59 humidity 80 43200 < th dose independent rect. 7 9
692 456.59 wind 9 43200 < th dose independent rect. 24 20
693 456.59 wind 9 43200 < th dose independent rect. 22 22
694 456.59 wind 7 43200 > th dose dependent no NA NA
710 456.61 humidity 90 43200 > th dose independent rect. 12 12
715 456.62 wind 9 43200 < th dose independent rect. 5 15
716 456.62 wind 9 43200 < th dose independent rect. 2 18
758 456.66 humidity 90 43200 < th dose independent rect. 2 21
766 456.67 humidity 80 43200 > th dose independent rect. 3 1
767 456.67 wind 9 43200 > th dose independent rect. 7 13
802 456.71 wind 7 43200 > th dose independent rect. 2 15
829 456.73 temperature 20 30 > th dose dependent rect. 19 7
832 456.74 temperature 25 720 < th dose independent rect. 19 1
869 456.77 wind 9 43200 < th dose independent sin 0 NA
884 456.78 wind 9 43200 > th dose independent rect. 8 20
898 456.79 humidity 90 43200 > th dose independent rect. 2 21
911 456.80 humidity 90 43200 < th dose independent rect. 2 17
916 456.80 wind 9 43200 < th dose dependent rect. 24 17
935 456.82 wind 3 43200 > th dose dependent rect. 19 23
940 456.83 wind 9 43200 > th dose independent rect. 2 18
945 456.83 wind 3 43200 > th dose dependent no NA NA
960 456.85 humidity 90 43200 > th dose dependent sin 18 NA