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Os01g0618200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0182) R2 : 0.894
β1 : -1.8 (0.0658) R2dD : 0.181 R2D : 0.131
β2 : 1.87 (0.0521) R2dC : 0.395 R2C : 0.586
β3 : -1.3 (0.0706) R2dE : 0.108 R2E : 0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.39 (0.0392) R2dN8 : 0.0324 R2N8 : 0.0185
σ : 0.336
deviance : 52.11
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C
peak time of C : 20.2
E
wheather : wind
threshold : 0.9
memory length : 94
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.79
open length of G : 3.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.96 0.339 11.8 -1.84 1.88 -1.32 -0.162 -0.628 -0.39 20.2 0.9 90 3.9 3.05
52.24 0.337 11.8 -1.83 1.88 -1.33 -0.161 -- -0.388 20.2 0.8004 95 3.8 3.05
51.8 0.335 11.8 -1.83 1.87 -1.3 -- -0.531 -0.389 20.2 0.8943 93 3.8 3.15
52.11 0.336 11.8 -1.8 1.87 -1.3 -- -- -0.39 20.2 0.9 94 3.79 3.13
153.61 0.577 11.7 -1.57 -- -1.91 -- -0.0459 -0.241 -- 0.5889 90 3.57 5.6
84.6 0.431 11.8 -1.81 2.39 -- -0.236 -- -0.53 19.7 -- -- -- --
84.75 0.431 11.8 -1.8 2.39 -- -- -- -0.53 19.7 -- -- -- --
81.72 0.421 11.7 -1.46 -- -2.08 -- -- -0.375 -- -2.525 326 0.75 8.88
137.11 0.545 11.7 -- 1.84 -1.25 -- -- -0.259 20.3 0.7743 134 3.35 3.46
392.92 0.926 11.8 -1.83 -- -- -- -- -0.565 -- -- -- -- --
170.38 0.611 11.8 -- 2.41 -- -- -- -0.329 19.7 -- -- -- --
156.15 0.582 11.7 -- -- -2.21 -- -- -0.276 -- -1.653 361 0.0157 9.07
481.6 1.02 11.7 -- -- -- -- -- -0.361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.38 wind 1.0 90 > th dose independent rect. 4 3
2 54.81 wind 5.0 90 < th dose independent rect. 4 3
4 55.43 radiation 20.0 90 < th dose independent rect. 4 3
5 55.45 humidity 70.0 90 > th dose independent rect. 4 3
8 55.57 precipitation 0.1 90 < th dose independent rect. 4 3
9 55.57 precipitation 0.1 90 < th dose dependent rect. 4 3
11 55.59 temperature 10.0 90 > th dose independent rect. 4 3
13 55.59 temperature 30.0 90 < th dose independent rect. 4 3
14 55.59 humidity 50.0 90 > th dose independent rect. 4 3
16 55.59 atmosphere 995.0 90 > th dose independent rect. 4 3
17 55.59 atmosphere 1015.0 90 < th dose independent rect. 4 3
19 55.59 temperature 10.0 90 > th dose independent rect. 7 21
21 55.89 precipitation 0.1 90 < th dose independent rect. 7 21
22 55.89 precipitation 0.1 90 < th dose dependent rect. 7 21
23 55.98 radiation 40.0 90 < th dose dependent rect. 4 3
24 56.22 wind 9.0 90 < th dose independent rect. 7 21
25 56.24 atmosphere 995.0 90 > th dose dependent rect. 4 3
27 56.33 wind 9.0 1440 < th dose independent rect. 5 3
28 56.33 temperature 10.0 1440 > th dose independent rect. 5 3
31 56.33 temperature 30.0 1440 < th dose independent rect. 5 3
35 56.33 humidity 50.0 1440 > th dose independent rect. 5 3
40 56.33 atmosphere 995.0 1440 > th dose independent rect. 5 3
41 56.33 atmosphere 1015.0 1440 < th dose independent rect. 5 3
42 56.33 temperature 10.0 1440 > th dose independent rect. 8 21
46 56.82 wind 9.0 90 < th dose dependent rect. 4 3
50 57.16 humidity 50.0 90 > th dose dependent rect. 4 3
53 57.24 atmosphere 995.0 90 > th dose independent rect. 7 21
54 57.30 temperature 10.0 90 > th dose dependent rect. 4 3
63 57.85 atmosphere 1015.0 90 < th dose independent rect. 7 21
75 58.55 precipitation 0.1 270 < th dose independent rect. 5 22
76 58.55 precipitation 0.1 270 < th dose dependent rect. 5 22
107 58.90 temperature 10.0 270 > th dose independent rect. 5 22
128 59.07 radiation 1.0 270 < th dose dependent rect. 3 5
193 59.90 temperature 30.0 90 < th dose dependent rect. 4 3
195 59.97 humidity 50.0 90 > th dose independent rect. 7 21
223 60.44 temperature 15.0 90 > th dose independent rect. 4 17
339 61.27 radiation 30.0 270 < th dose independent rect. 16 14
340 61.29 temperature 10.0 270 > th dose independent rect. 6 10
341 61.29 atmosphere 1015.0 270 < th dose independent rect. 6 10
342 61.29 temperature 10.0 270 > th dose independent rect. 16 14
358 61.32 humidity 50.0 90 > th dose dependent rect. 7 21
360 61.34 precipitation 0.1 90 < th dose independent rect. 21 7
361 61.34 precipitation 0.1 90 < th dose dependent rect. 21 7
372 61.42 wind 7.0 90 < th dose independent rect. 21 7
397 61.49 precipitation 0.1 270 < th dose independent rect. 6 10
403 61.49 precipitation 0.1 270 < th dose dependent rect. 6 10
411 61.53 wind 9.0 270 < th dose independent rect. 16 14
418 61.57 temperature 10.0 90 > th dose independent rect. 21 7
419 61.57 temperature 30.0 90 < th dose independent rect. 21 7
420 61.57 humidity 50.0 90 > th dose independent rect. 21 7
423 61.57 atmosphere 995.0 90 > th dose independent rect. 21 7
424 61.57 radiation 1.0 90 < th dose independent rect. 21 7
430 61.57 atmosphere 1015.0 90 < th dose independent rect. 4 17
431 61.57 radiation 1.0 90 < th dose dependent rect. 21 7
452 61.64 radiation 40.0 270 < th dose dependent rect. 16 14
455 61.68 wind 9.0 270 < th dose independent rect. 6 10
457 61.71 wind 9.0 90 < th dose independent rect. 4 17
487 61.92 temperature 10.0 90 > th dose dependent rect. 22 6
508 62.02 wind 9.0 90 < th dose dependent rect. 21 7
509 62.03 atmosphere 995.0 270 > th dose independent rect. 6 10
515 62.07 atmosphere 995.0 270 > th dose independent rect. 16 14
525 62.15 precipitation 0.1 90 < th dose independent rect. 4 17
527 62.15 precipitation 0.1 90 < th dose dependent rect. 4 17
558 62.38 humidity 50.0 90 > th dose dependent rect. 21 7
559 62.39 temperature 10.0 1440 > th dose independent rect. 23 6
562 62.39 temperature 30.0 1440 < th dose independent rect. 23 6
566 62.39 humidity 50.0 1440 > th dose independent rect. 23 6
575 62.39 atmosphere 995.0 1440 > th dose independent rect. 23 6
576 62.39 radiation 20.0 1440 < th dose independent rect. 23 6
588 62.39 temperature 10.0 1440 > th dose independent rect. 5 18
594 62.41 humidity 90.0 10 < th dose independent rect. 4 3
630 62.59 atmosphere 1015.0 90 < th dose dependent rect. 4 3
660 62.73 radiation 1.0 270 < th dose dependent rect. 3 16
665 62.76 temperature 15.0 270 > th dose independent rect. 1 20
723 62.91 radiation 1.0 270 < th dose dependent rect. 2 18
727 62.95 atmosphere 1015.0 90 < th dose independent rect. 21 7
733 62.96 wind 9.0 90 < th dose dependent rect. 7 21
782 63.05 temperature 15.0 270 > th dose independent rect. 2 18
815 63.23 radiation 1.0 270 < th dose independent rect. 2 18
858 63.43 temperature 15.0 270 > th dose independent rect. 11 10
876 63.51 temperature 30.0 90 < th dose independent rect. 7 21
893 63.53 atmosphere 995.0 90 > th dose independent rect. 4 17
939 63.65 precipitation 0.1 270 < th dose independent rect. 21 14
943 63.65 precipitation 0.1 270 < th dose dependent rect. 21 14
958 63.70 temperature 10.0 270 > th dose dependent rect. 21 4
975 63.80 wind 9.0 270 < th dose dependent rect. 21 4
977 63.81 humidity 50.0 270 > th dose independent rect. 6 10