BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0618200 Os01g0618200|AK102319
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53140.1 | chr5:21549228-21552132 FORWARD LENGTH=421 130 3e-31
AT5G24940.1 | chr5:8591407-8593601 REVERSE LENGTH=448 100 4e-22
AT5G10740.1 | chr5:3393797-3395848 REVERSE LENGTH=355 99 2e-21
AT4G31750.1 | chr4:15364657-15367207 REVERSE LENGTH=312 97 7e-21
AT1G43900.1 | chr1:16654045-16655810 FORWARD LENGTH=372 87 6e-18
AT1G78200.1 | chr1:29420483-29421650 FORWARD LENGTH=284 65 2e-11
AT1G34750.1 | chr1:12736386-12737727 REVERSE LENGTH=283 64 5e-11
AT2G20630.2 | chr2:8897335-8899648 REVERSE LENGTH=291 60 5e-10
AT3G15260.1 | chr3:5138842-5140242 FORWARD LENGTH=290 60 9e-10
AT2G34740.1 | chr2:14658730-14660305 FORWARD LENGTH=340 57 6e-09
AT4G28400.1 | chr4:14048499-14050118 FORWARD LENGTH=284 55 2e-08
AT1G22280.3 | chr1:7874236-7875496 FORWARD LENGTH=288 50 8e-07
AT1G07160.1 | chr1:2198155-2199678 REVERSE LENGTH=381 47 4e-06
AT2G30020.1 | chr2:12814437-12815904 FORWARD LENGTH=397 47 5e-06
>AT5G53140.1 | chr5:21549228-21552132 FORWARD LENGTH=421
Length = 420
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 76/96 (79%), Gaps = 3/96 (3%)
Query: 90 PPKGSDEDDEARYICGGWTSDDGRMSCGYSSFRGRRANMEDFYDIKSSKVDDNQINLFGI 149
PP ++ D+ YI GGW +DDG +SCGY SFRG+R+ MEDFYDIK+S ++ + +FGI
Sbjct: 79 PP---EKVDDGGYIGGGWKNDDGSLSCGYCSFRGKRSTMEDFYDIKASTIEGQAVCMFGI 135
Query: 150 FDGHGGSHAAEHLKKHLFENLLKHPSFITDTKSAIS 185
FDGHGGS AAE+LK+HLF NL+KHP F+TDTK A++
Sbjct: 136 FDGHGGSRAAEYLKEHLFNNLMKHPQFLTDTKLALN 171
>AT5G24940.1 | chr5:8591407-8593601 REVERSE LENGTH=448
Length = 447
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%)
Query: 104 CGGWTSDDGRMSCGYSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLK 163
GG S +G+ S GY+S G+R++MEDF++ + +D + LFG+FDGHGGS AAE++K
Sbjct: 22 SGGGLSQNGKFSYGYASSAGKRSSMEDFFETRIDGIDGEIVGLFGVFDGHGGSRAAEYVK 81
Query: 164 KHLFENLLKHPSFITDTKSAIS 185
+HLF NL+ HP FI+DTKSAI+
Sbjct: 82 RHLFSNLITHPKFISDTKSAIA 103
>AT5G10740.1 | chr5:3393797-3395848 REVERSE LENGTH=355
Length = 354
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 62/82 (75%)
Query: 104 CGGWTSDDGRMSCGYSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLK 163
GG S +G+ S GY+S G+R++MEDF++ + ++ + LFG+FDGHGG+ AAE++K
Sbjct: 22 SGGGLSQNGKFSYGYASSAGKRSSMEDFFETRIDGINGEIVGLFGVFDGHGGARAAEYVK 81
Query: 164 KHLFENLLKHPSFITDTKSAIS 185
+HLF NL+ HP FI+DTKSAI+
Sbjct: 82 RHLFSNLITHPKFISDTKSAIT 103
>AT4G31750.1 | chr4:15364657-15367207 REVERSE LENGTH=312
Length = 311
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 63/83 (75%)
Query: 103 ICGGWTSDDGRMSCGYSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHL 162
+ GG S +G+ S GY+S G+R++MEDFY+ + V+ + LFG+FDGHGG+ AAE++
Sbjct: 21 VSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYV 80
Query: 163 KKHLFENLLKHPSFITDTKSAIS 185
K++LF NL++HP FI+DT +AI+
Sbjct: 81 KQNLFSNLIRHPKFISDTTAAIA 103
>AT1G43900.1 | chr1:16654045-16655810 FORWARD LENGTH=372
Length = 371
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 53/72 (73%)
Query: 113 RMSCGYSSFRGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLLK 172
+ S GYSS +G+RA MED+++ + S V+ + FG+FDGHGG+ AE+LK +LF+NL+
Sbjct: 121 KFSYGYSSLKGKRATMEDYFETRISDVNGQMVAFFGVFDGHGGARTAEYLKNNLFKNLVS 180
Query: 173 HPSFITDTKSAI 184
H FI+DTK AI
Sbjct: 181 HDDFISDTKKAI 192
>AT1G78200.1 | chr1:29420483-29421650 FORWARD LENGTH=284
Length = 283
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 111 DGRMSCGYSSFRGRRA-NMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFEN 169
+G + G+S +G+ +MED++ K + + N++ LF IFDGH G H A +L+KHLF N
Sbjct: 28 EGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSN 87
Query: 170 LLKHPSFITDTKSAIS 185
+LK F+ D + AI+
Sbjct: 88 ILKDGEFLVDPRRAIA 103
>AT1G34750.1 | chr1:12736386-12737727 REVERSE LENGTH=283
Length = 282
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 109 SDDGRMSCGYSSFRGRRAN--MEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHL 166
++DG + GYS +G+ AN MED++ K K+D N++ LF I+DGH G +L+KHL
Sbjct: 28 NNDGEIKFGYSLVKGK-ANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHL 86
Query: 167 FENLLKHPSFITDTKSAI 184
F N+LK F D + +I
Sbjct: 87 FSNILKEEQFRYDPQRSI 104
>AT2G20630.2 | chr2:8897335-8899648 REVERSE LENGTH=291
Length = 290
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 12/91 (13%)
Query: 103 ICGGWTSDDGR--------MSCGYSSFRGRRAN-MEDFYDIKSSKVDDNQINLFGIFDGH 153
+CG SD GR ++ GY +G+ + MED+ + KVD + + LF IFDGH
Sbjct: 14 LCG---SDTGRGKTKVWKNIAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGH 70
Query: 154 GGSHAAEHLKKHLFENLLKHPSFITDTKSAI 184
G A++L+ +LF+N+LK F TDTK+AI
Sbjct: 71 LGHDVAKYLQTNLFDNILKEKDFWTDTKNAI 101
>AT3G15260.1 | chr3:5138842-5140242 FORWARD LENGTH=290
Length = 289
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 113 RMSCGYSSFRGRRA-NMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLL 171
+++ G+ +G+ MED+ K +VDDN++ LF IFDGH ++L HLFEN+L
Sbjct: 39 QITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLFENIL 98
Query: 172 KHPSFITDTKSAI 184
K P+F + + AI
Sbjct: 99 KEPNFWQEPEKAI 111
>AT2G34740.1 | chr2:14658730-14660305 FORWARD LENGTH=340
Length = 339
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 117 GYSSFRGRRAN-MEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLLKHPS 175
GY +G+ + MEDF + V + + L+ IFDGH GS A++L+ HLF+N+L P
Sbjct: 89 GYHLVKGQMGHGMEDFIVADTKTVKGHNLGLYAIFDGHSGSDVADYLQNHLFDNILSQPD 148
Query: 176 FITDTKSAI 184
F + K AI
Sbjct: 149 FWRNPKKAI 157
>AT4G28400.1 | chr4:14048499-14050118 FORWARD LENGTH=284
Length = 283
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 114 MSCGYSSFRGRRAN-MEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLLK 172
++ G+ +G+ ++ MED+ + K++ +++ LF IFDGH G A++L+ +LF+N+LK
Sbjct: 34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILK 93
Query: 173 HPSFITDTKSAI 184
F TDT++AI
Sbjct: 94 EKDFWTDTENAI 105
>AT1G22280.3 | chr1:7874236-7875496 FORWARD LENGTH=288
Length = 287
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 110 DDGRMSCGYSSFRGRRAN--MEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLF 167
D+G + G+S +G+ AN MED++ + D+++ LF I+DGH G +L+K LF
Sbjct: 28 DEGMIKYGFSLVKGK-ANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLF 86
Query: 168 ENLLKH 173
N+LK
Sbjct: 87 SNILKE 92
>AT1G07160.1 | chr1:2198155-2199678 REVERSE LENGTH=381
Length = 380
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 117 GYSSF--RGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLL 171
GYS + RG+R MED + ++ D + +FG++DGHGG AAE K+L N+L
Sbjct: 122 GYSVYCKRGKREAMEDRFSAITNLQGDPKQAIFGVYDGHGGPTAAEFAAKNLCSNIL 178
>AT2G30020.1 | chr2:12814437-12815904 FORWARD LENGTH=397
Length = 396
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 117 GYSSF--RGRRANMEDFYDIKSSKVDDNQINLFGIFDGHGGSHAAEHLKKHLFENLLKH 173
GYS + RGRR MED + ++ D + +FG++DGHGG AAE K+L +N+++
Sbjct: 139 GYSVYCKRGRREAMEDRFSAITNLHGDRKQAIFGVYDGHGGVKAAEFAAKNLDKNIVEE 197
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,315,286
Number of extensions: 112327
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 15
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)