Os01g0616500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein L22.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0616500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 50S ribosomal protein L22.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.61 | 0.341 | 10.4 | -0.256 | 0.762 | -0.899 | 0.127 | -0.131 | -0.2 | 19.1 | 30.05 | 93 | -- | -- |
| 52.63 | 0.338 | 10.4 | -0.275 | 0.762 | -0.896 | 0.134 | -- | -0.205 | 19.1 | 30.1 | 95 | -- | -- |
| 52.65 | 0.338 | 10.4 | -0.26 | 0.761 | -0.907 | -- | -0.133 | -0.201 | 19.1 | 30.1 | 92 | -- | -- |
| 52.68 | 0.338 | 10.4 | -0.278 | 0.761 | -0.901 | -- | -- | -0.203 | 19.1 | 30.17 | 95 | -- | -- |
| 74.93 | 0.403 | 10.4 | -0.433 | -- | -1.51 | -- | 0.241 | -0.267 | -- | 45.37 | 297 | -- | -- |
| 63.02 | 0.372 | 10.3 | -0.0569 | 0.934 | -- | 0.4 | -- | -0.0332 | 18 | -- | -- | -- | -- |
| 63.41 | 0.373 | 10.3 | -0.0607 | 0.936 | -- | -- | -- | -0.0318 | 18 | -- | -- | -- | -- |
| 74.97 | 0.403 | 10.4 | -0.395 | -- | -1.5 | -- | -- | -0.257 | -- | 50.7 | 294 | -- | -- |
| 54.55 | 0.344 | 10.4 | -- | 0.79 | -0.807 | -- | -- | -0.138 | 18.9 | 31.76 | 67 | -- | -- |
| 108.81 | 0.487 | 10.3 | -0.0878 | -- | -- | -- | -- | -0.053 | -- | -- | -- | -- | -- |
| 63.5 | 0.373 | 10.3 | -- | 0.937 | -- | -- | -- | -0.025 | 18 | -- | -- | -- | -- |
| 78.81 | 0.413 | 10.4 | -- | -- | -1.37 | -- | -- | -0.198 | -- | 52.76 | 288 | -- | -- |
| 109.01 | 0.487 | 10.3 | -- | -- | -- | -- | -- | -0.0432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 48.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 11 | 49.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 31 | 50.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 40 | 50.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 43 | 50.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 72 | 50.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 80 | 50.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 105 | 51.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 117 | 51.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 126 | 51.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 128 | 51.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 132 | 51.48 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 157 | 51.68 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 164 | 51.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 187 | 51.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 264 | 52.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 280 | 52.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 297 | 52.61 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 298 | 52.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 355 | 52.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 356 | 52.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 367 | 52.95 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 387 | 53.02 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 424 | 53.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 457 | 53.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 466 | 53.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 469 | 53.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 488 | 53.31 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 496 | 53.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 519 | 53.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 585 | 53.50 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 14 |
| 615 | 53.56 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 619 | 53.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 625 | 53.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 636 | 53.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 643 | 53.61 | humidity | 90 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 668 | 53.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 671 | 53.65 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 681 | 53.67 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 684 | 53.67 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 694 | 53.69 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 705 | 53.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 706 | 53.70 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 707 | 53.70 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 711 | 53.71 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 733 | 53.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 734 | 53.74 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 757 | 53.76 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 777 | 53.78 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 781 | 53.79 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 823 | 53.81 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 824 | 53.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 831 | 53.82 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 845 | 53.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 14 |
| 859 | 53.84 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 868 | 53.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 946 | 53.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 965 | 53.94 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 998 | 53.97 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |