BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0616500 Os01g0616500|AK073157
         (278 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28360.1  | chr4:14029294-14030926 REVERSE LENGTH=272          250   5e-67
AT1G52370.1  | chr1:19507052-19508699 FORWARD LENGTH=270          245   2e-65
ATCG00810.1  | chrC:83467-83949 REVERSE LENGTH=161                 58   5e-09

>AT4G28360.1 | chr4:14029294-14030926 REVERSE LENGTH=272
          Length = 271

 Score =  250 bits (639), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 131/242 (54%), Positives = 174/242 (71%), Gaps = 11/242 (4%)

Query: 27  QDGRVFAASYSGSSGGVNAPFGLGQYANLLRAQAFASRGVALNFHQLIRNAGISTTRNLL 86
           ++  +  A+YS S+  + +PF  G   +LLR  +++SR +  +  QL    GIST+R L 
Sbjct: 20  KNSHISTANYSSSTRNLESPFSQGYLQSLLRP-SYSSRPLYHHLQQL----GISTSRQLQ 74

Query: 87  AADDAMVPVSSPLTPP--LGDGEQTDKKGAIVKRLKVQAIKKDIKQSPKKVNLVAKLVRG 144
           A+++   PVSSPL+ P  LG G++ ++K  I KR KVQA+ K IKQSPKKVNLVA LVRG
Sbjct: 75  ASEE---PVSSPLSSPALLGSGKEEEQK-IIPKRQKVQAVLKSIKQSPKKVNLVAALVRG 130

Query: 145 MRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLS 204
           MRVEDAL+QLQVTVKRAA+TVY+VIH+ARANA HNHGLDPD+L+V EAFVGKGL+ K+++
Sbjct: 131 MRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDPDRLLVAEAFVGKGLFGKKVA 190

Query: 205 YHAKGRCGVMVRPRCRLXXXXXXXXXXXXXXXXXLRVSNYKKLTRKEKQLMPHRLIEVSP 264
           YHAKGR G++  PRCRL                 L+V N+KK +++E+QL+PH+LIE SP
Sbjct: 191 YHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNFKKKSKRERQLVPHKLIETSP 250

Query: 265 RW 266
            W
Sbjct: 251 IW 252



>AT1G52370.1 | chr1:19507052-19508699 FORWARD LENGTH=270
          Length = 269

 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/242 (54%), Positives = 173/242 (71%), Gaps = 12/242 (4%)

Query: 27  QDGRVFAASYSGSSGGVNAPFGLGQYANLLRAQAFASRGVALNFHQLIRNAGISTTRNLL 86
           +D  +  A+YS S+  + +PF  G   +LLR+  ++SR +  +  QL    GIST+R L 
Sbjct: 20  KDSHISTANYS-STRNLESPFSQGYLQSLLRS-TYSSRPLYYHLQQL----GISTSRQLQ 73

Query: 87  AADDAMVPVSSPLTPP--LGDGEQTDKKGAIVKRLKVQAIKKDIKQSPKKVNLVAKLVRG 144
           A ++   PVSSPL+ P  LG G++ ++K  I KR KVQA+ K IKQSPKKVNLVA LVRG
Sbjct: 74  AGEE---PVSSPLSSPALLGSGKEEEQK-IIPKRQKVQAVLKSIKQSPKKVNLVAALVRG 129

Query: 145 MRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLS 204
           MRVEDAL+QLQVTVKRA++TVY+VIH+ARANA HNHGLDPD+L+V EAFVGKGL+ K+++
Sbjct: 130 MRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFVGKGLFGKKVA 189

Query: 205 YHAKGRCGVMVRPRCRLXXXXXXXXXXXXXXXXXLRVSNYKKLTRKEKQLMPHRLIEVSP 264
           YHAKGR G++  PRCRL                 L+V N+KKL ++++QL+PH+LIE SP
Sbjct: 190 YHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKKLNKRQRQLVPHKLIETSP 249

Query: 265 RW 266
            W
Sbjct: 250 IW 251



>ATCG00810.1 | chrC:83467-83949 REVERSE LENGTH=161
          Length = 160

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 56/102 (54%)

Query: 120 KVQAIKKDIKQSPKKVNLVAKLVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHN 179
           +V A+ + I  S  K   V   +RG   E+AL+ L++   R    ++++++SA ANA+HN
Sbjct: 12  EVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHN 71

Query: 180 HGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGVMVRPRCRL 221
            G     L++ +A V +G  +K+L   A+GR   + R  C +
Sbjct: 72  KGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHI 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,455,795
Number of extensions: 156180
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 181
Effective length of database: 8,447,217
Effective search space: 1528946277
Effective search space used: 1528946277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)