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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0616300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin-like fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.0497) R2 : 0.42
β1 : -1.64 (0.181) R2dD : 0.115 R2D : 0.0414
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.73 (0.306) R2dE : 0.14 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.49 (1.06) R2dD*E : 0.124 R2D*E : -0.0754
γ1 : -0.999 (0.111) R2dN8 : 0.16 R2N8 : 0.12
σ : 0.902
deviance : 375.38
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 70.47
memory length : 4668
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 2.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
358.09 0.889 5.58 -1.61 0.397 2.67 -1.62 8.93 -0.976 8.55 70.26 4643 17.9 1.43
387.31 0.917 5.57 -1.51 0.755 1.74 -1.06 -- -1.15 7.79 76.94 3191 17.8 1.02
366.09 0.891 5.59 -1.65 0.425 2.88 -- 9.9 -1 8.93 70.33 4679 17.8 1.53
394.61 0.925 5.54 -1.69 0.703 1.73 -- -- -1.13 7.41 76.46 3184 17.8 0.883
375.38 0.902 5.61 -1.64 -- 2.73 -- 9.49 -0.999 -- 70.47 4668 17.8 2.25
450.33 0.995 5.58 -1.88 0.453 -- -1.77 -- -1.21 7.82 -- -- -- --
458.57 1 5.58 -1.93 0.477 -- -- -- -1.22 6.88 -- -- -- --
396.79 0.928 5.55 -1.73 -- 1.34 -- -- -1.07 -- 76.58 2465 17.9 0.451
457.77 0.996 5.52 -- 0.617 1.85 -- -- -1.1 7.26 78.41 14656 17.8 0.679
470.49 1.01 5.59 -1.92 -- -- -- -- -1.21 -- -- -- -- --
557.18 1.1 5.54 -- 0.456 -- -- -- -1 7.14 -- -- -- --
447.14 0.985 5.56 -- -- 2.24 -- -- -1.07 -- 89.61 28570 17.3 0.5
568.14 1.11 5.55 -- -- -- -- -- -0.993 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 361.00 humidity 70 4320 < th dose dependent rect. 18 1
26 362.84 humidity 60 14400 < th dose independent rect. 17 1
27 363.13 humidity 60 14400 > th dose independent rect. 17 1
30 363.78 humidity 50 4320 > th dose independent rect. 15 2
31 363.93 humidity 50 4320 > th dose independent rect. 15 18
32 364.00 humidity 50 4320 > th dose independent rect. 15 5
33 364.01 humidity 50 4320 > th dose independent rect. 15 13
42 364.17 humidity 50 4320 > th dose independent rect. 15 10
65 365.46 humidity 50 4320 > th dose independent sin 12 NA
67 366.09 humidity 60 14400 < th dose independent rect. 17 16
71 366.85 humidity 60 14400 > th dose independent rect. 17 15
86 366.93 humidity 60 14400 > th dose independent rect. 17 11
89 367.02 humidity 60 14400 > th dose independent rect. 17 4
90 367.04 humidity 60 14400 > th dose independent rect. 17 8
123 368.65 humidity 50 1440 < th dose independent rect. 16 1
124 368.69 humidity 50 4320 < th dose independent sin 12 NA
125 368.70 radiation 20 1440 > th dose dependent rect. 16 16
126 368.79 humidity 50 4320 < th dose independent rect. 15 20
149 369.12 humidity 60 14400 < th dose independent rect. 17 5
173 369.64 humidity 70 1440 > th dose independent rect. 17 11
175 369.69 humidity 70 1440 > th dose independent rect. 17 3
190 369.72 humidity 70 1440 > th dose independent rect. 17 8
212 369.94 radiation 20 1440 < th dose independent rect. 16 16
216 370.33 radiation 20 1440 > th dose dependent rect. 7 1
305 371.66 radiation 20 1440 > th dose independent rect. 16 16
324 372.25 temperature 30 720 > th dose dependent rect. 18 15
325 372.46 humidity 70 1440 > th dose independent sin 11 NA
326 372.50 humidity 70 1440 > th dose independent rect. 17 17
356 372.74 humidity 60 4320 < th dose dependent sin 12 NA
361 372.84 radiation 20 1440 < th dose independent rect. 7 1
382 373.08 humidity 70 1440 < th dose independent sin 11 NA
390 373.11 radiation 20 1440 < th dose independent rect. 2 6
426 373.44 radiation 20 1440 < th dose independent rect. 19 13
441 373.92 temperature 30 720 > th dose dependent rect. 18 1
461 374.08 temperature 30 1440 > th dose dependent rect. 17 18
462 374.09 radiation 20 1440 > th dose independent rect. 7 1
473 374.17 wind 1 90 < th dose independent rect. 4 1
477 374.21 wind 1 1440 < th dose independent rect. 4 2
495 374.28 wind 1 270 < th dose dependent rect. 4 1
541 374.60 temperature 30 1440 < th dose independent rect. 18 17
546 375.09 humidity 70 1440 < th dose independent rect. 16 19
602 375.71 temperature 30 1440 > th dose independent rect. 18 17
607 375.84 temperature 30 1440 > th dose dependent sin 10 NA
692 376.87 temperature 30 1440 < th dose independent rect. 9 2
714 377.14 temperature 30 720 > th dose independent rect. 18 15
715 377.15 temperature 30 1440 < th dose independent sin 10 NA
744 377.40 temperature 30 1440 > th dose independent rect. 9 2
788 377.63 temperature 30 1440 > th dose independent sin 11 NA
831 377.82 temperature 30 1440 > th dose dependent rect. 10 1
867 378.21 temperature 30 720 > th dose independent rect. 18 1