BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0616300 Os01g0616300|J075161B03
         (62 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53300.1  | chr1:19879726-19882375 FORWARD LENGTH=700           77   2e-15
AT3G58620.1  | chr3:21680397-21682959 FORWARD LENGTH=683           69   5e-13
AT3G14950.1  | chr3:5030216-5032892 REVERSE LENGTH=722             69   5e-13
AT2G42580.1  | chr2:17728855-17731461 FORWARD LENGTH=692           69   7e-13

>AT1G53300.1 | chr1:19879726-19882375 FORWARD LENGTH=700
          Length = 699

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query: 5   LNFLKVNVEDSPMVAKAENVRIVPTFKIYKDGVKVKEMICPSLHVLRYSVRHYA 58
           ++FLKV+++  P +  AENVR+VPT KIYK+G +VKE++CPS  VL YSVRHY+
Sbjct: 645 IHFLKVDIDKCPSIGNAENVRVVPTVKIYKNGSRVKEIVCPSKEVLEYSVRHYS 698



>AT3G58620.1 | chr3:21680397-21682959 FORWARD LENGTH=683
          Length = 682

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 4   LLNFLKVNVEDSPMVAKAENVRIVPTFKIYKDGVKVKEMICPSLHVLRYSVRHY 57
           L++F KV+VE+S  +AKAE+++ +PTFKIYK G KVKEM+CPS  +L  SV H+
Sbjct: 627 LVHFFKVDVEESLALAKAESIKKIPTFKIYKKGEKVKEMVCPSHQLLEDSVTHF 680



>AT3G14950.1 | chr3:5030216-5032892 REVERSE LENGTH=722
          Length = 721

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 5   LNFLKVNVEDSPMVAKAENVRIVPTFKIYKDGVKVKEMICPSLHVLRYSVRHYAV 59
           L+FLKV +   P V  AE VR+VPTFKIYK G+++KE++CPS   L  +VRHY +
Sbjct: 667 LHFLKVEIVKCPEVGNAERVRVVPTFKIYKLGIRMKEIVCPSKEALEKTVRHYGL 721



>AT2G42580.1 | chr2:17728855-17731461 FORWARD LENGTH=692
          Length = 691

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 4   LLNFLKVNVEDSPMVAKAENVRIVPTFKIYKDGVKVKEMICPSLHVLRYSVRHY 57
           L++F  V+VE+S  +AKAE++R VPTFK+YK+G KVKEM+CPS   L  S++H+
Sbjct: 636 LVHFFMVDVEESMALAKAESIRKVPTFKMYKNGDKVKEMVCPSHQFLEDSIKHF 689



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,160,898
Number of extensions: 32106
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 4
Length of query: 62
Length of database: 11,106,569
Length adjustment: 35
Effective length of query: 27
Effective length of database: 10,147,009
Effective search space: 273969243
Effective search space used: 273969243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)