Os01g0616100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0616100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.1 | 0.194 | 10.3 | 0.678 | 0.29 | 0.544 | -0.624 | 0.0636 | 0.294 | 8.2 | 80.06 | 1416 | -- | -- |
| 17.1 | 0.193 | 10.3 | 0.681 | 0.29 | 0.547 | -0.627 | -- | 0.293 | 8.2 | 80.16 | 1414 | -- | -- |
| 18.27 | 0.199 | 10.3 | 0.654 | 0.292 | 0.542 | -- | 0.142 | 0.292 | 8.01 | 80.06 | 1414 | -- | -- |
| 18.29 | 0.199 | 10.2 | 0.664 | 0.292 | 0.55 | -- | -- | 0.295 | 8.02 | 80.14 | 1414 | -- | -- |
| 19.56 | 0.206 | 10.3 | 0.734 | -- | 0.622 | -- | -0.786 | 0.311 | -- | 79.66 | 2167 | -- | -- |
| 20.81 | 0.214 | 10.3 | 0.673 | 0.275 | -- | -0.626 | -- | 0.261 | 8.23 | -- | -- | -- | -- |
| 22.02 | 0.22 | 10.3 | 0.654 | 0.277 | -- | -- | -- | 0.262 | 8.18 | -- | -- | -- | -- |
| 20.11 | 0.209 | 10.3 | 0.658 | -- | 0.582 | -- | -- | 0.297 | -- | 80 | 2081 | -- | -- |
| 29.48 | 0.253 | 10.3 | -- | 0.277 | 0.483 | -- | -- | 0.244 | 7.45 | 81 | 2653 | -- | -- |
| 26.23 | 0.239 | 10.3 | 0.657 | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
| 33.3 | 0.27 | 10.3 | -- | 0.28 | -- | -- | -- | 0.189 | 8.01 | -- | -- | -- | -- |
| 31.19 | 0.26 | 10.3 | -- | -- | 0.596 | -- | -- | 0.227 | -- | 80.7 | 2087 | -- | -- |
| 37.6 | 0.286 | 10.3 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.49 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 16.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 5 | 16.67 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 6 | 16.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 18 | 16.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 24 | 16.73 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 27 | 16.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 55 | 16.83 | humidity | 80 | 1440 | > th | dose independent | sin | 19 | NA |
| 75 | 16.86 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 76 | 16.87 | humidity | 80 | 1440 | < th | dose independent | sin | 19 | NA |
| 87 | 16.88 | humidity | 70 | 1440 | > th | dose dependent | sin | 19 | NA |
| 136 | 16.94 | humidity | 90 | 720 | > th | dose dependent | sin | 21 | NA |
| 140 | 16.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 162 | 16.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 208 | 17.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 239 | 17.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 305 | 17.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 318 | 17.11 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 327 | 17.12 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 347 | 17.12 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 351 | 17.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 12 |
| 358 | 17.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 20 |
| 404 | 17.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 440 | 17.17 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 449 | 17.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 501 | 17.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 532 | 17.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 599 | 17.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 602 | 17.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 668 | 17.27 | humidity | 70 | 1440 | > th | dose dependent | no | NA | NA |
| 720 | 17.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 721 | 17.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 742 | 17.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 788 | 17.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 799 | 17.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 879 | 17.38 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 887 | 17.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 888 | 17.39 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 896 | 17.39 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 926 | 17.40 | humidity | 90 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 956 | 17.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 971 | 17.42 | humidity | 90 | 1440 | < th | dose dependent | sin | 15 | NA |