BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0616100 Os01g0616100|AK105714
(648 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71410.1 | chr1:26913070-26917515 REVERSE LENGTH=910 585 e-167
AT1G22870.1 | chr1:8089501-8094173 FORWARD LENGTH=914 582 e-166
AT2G40730.1 | chr2:16990083-16996072 REVERSE LENGTH=799 62 8e-10
>AT1G71410.1 | chr1:26913070-26917515 REVERSE LENGTH=910
Length = 909
Score = 585 bits (1507), Expect = e-167, Method: Compositional matrix adjust.
Identities = 302/522 (57%), Positives = 383/522 (73%), Gaps = 48/522 (9%)
Query: 1 MYMNSLTYLTSEAFSNIPADLVVDLQRMLSVDVASRPSAMAFTGSSFFRNDTRLRALRFL 60
MYMN+L Y+T+E+FS+IP++LV DLQRMLS + + RP+A+ FTGS+FFR+D RLRALRFL
Sbjct: 296 MYMNTLNYITNESFSSIPSELVSDLQRMLSTNESFRPTALDFTGSNFFRSDARLRALRFL 355
Query: 61 DHLLERDNMQKTEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNMVMQPMILPMVLTIAE 120
DHLLERDNMQK+EFLKALSDMWKDFDSRVLRYKVLPPLCAELRN+V+QP+ILPMVLTIA+
Sbjct: 356 DHLLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNLVLQPIILPMVLTIAQ 415
Query: 121 SQDKGDFELSTLPALVPVFTSASGETLLLLVKHADLIIHKATQEHLISHVLPMLVRAYDD 180
SQD+ DFEL TLPALVPV ++ASG+TLLLLVKHADLI +K EHL+SHVLP+L+RAY+D
Sbjct: 416 SQDRTDFELITLPALVPVLSTASGDTLLLLVKHADLITNKTDSEHLVSHVLPLLLRAYND 475
Query: 181 TDPRLQEEVLRRTVPLSRQLDVKLLKQSVLPRVHGLALKTTVAAVRVNALRCLGDLVPSL 240
D R+QEEVL+R+ +++QLD ++++Q++LPRVHGLALKTTVAAVRVNAL CL +LV +L
Sbjct: 476 NDVRIQEEVLKRSTSVAKQLDGQVVRQAILPRVHGLALKTTVAAVRVNALLCLAELVQTL 535
Query: 241 DKEGILEILQTLRRCTAVDHTAPTLMCTLGVANAIFKQCGVEFAAEYVIPLVFPLLTAHQ 300
DK +EIL+T++RCTAVD +APTLMCTL VANAI KQ GVEF AE+V+ L+ PLLTA Q
Sbjct: 536 DKPAAIEILETIQRCTAVDRSAPTLMCTLAVANAILKQYGVEFTAEHVLTLMMPLLTAQQ 595
Query: 301 LNVQQFAKYILFVKDITSKIEEKRGVTVTDNGNTEVKVSPSLANGIHSEPLSRGVGQTEQ 360
LNVQQFAKY+LFVKDI KIEEKRGVTV D+G EVK S ANG+ E+
Sbjct: 596 LNVQQFAKYMLFVKDILRKIEEKRGVTVNDSGVPEVKPH-SAANGLQ---FQSSTQIPEK 651
Query: 361 IQTAKGA--AWDEDWG-PTKKASTPSQSSDSNARMKQPSDPFDFSTQTKQPSALPFDFST 417
+ +A + AWDEDWG P+K ++ + +S + +D F+ ST QPS +
Sbjct: 652 VASAAKSSPAWDEDWGSPSKDSAVGNPASSRH----NTNDQFNKSTDQSQPSIM------ 701
Query: 418 QQPKPSSAIPQVTPATIXXXXXXXXXXXXXXXXXXXTSGSCVPVDIEWPPRKNTSSDFNA 477
S +P T A +C VDIEWPPR+ SS A
Sbjct: 702 ------STLPNKTTAPT----------------------TCPAVDIEWPPRQ--SSSLTA 731
Query: 478 PLSVSEQSKSGGLS-SDGLADIDPFADWPPKASSGASILAVG 518
P + ++ + G S + G ++DPFA+WPP+ ++GAS+ + G
Sbjct: 732 PATDNQTQLNTGTSFASGFDELDPFANWPPRPNNGASVASTG 773
>AT1G22870.1 | chr1:8089501-8094173 FORWARD LENGTH=914
Length = 913
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 328/671 (48%), Positives = 433/671 (64%), Gaps = 76/671 (11%)
Query: 1 MYMNSLTYLTSEAFSNIPADLVVDLQRMLSVDVASRPSAMAFTGSSFFRNDTRLRALRFL 60
MYMN+L YLT+E FS+IP+DLV DLQRMLS++ + RP+A+ FTGSSFFR+DTRLRALRFL
Sbjct: 296 MYMNTLNYLTNETFSSIPSDLVSDLQRMLSMNESYRPTALDFTGSSFFRSDTRLRALRFL 355
Query: 61 DHLLERDNMQKTEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNMVMQPMILPMVLTIAE 120
DH+LERDNMQK+EFLKALSDMWKDFDSRVLRYKVLPPLCAELRN+VMQP+ILPMVLTIAE
Sbjct: 356 DHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNLVMQPVILPMVLTIAE 415
Query: 121 SQDKGDFELSTLPALVPVFTSASGETLLLLVKHADLIIHKATQEHLISHVLPMLVRAYDD 180
SQDK DFEL+TLPALVPV ++A+G+TLLLL+K A+LII+K EHL+SHVLP+L+RAY+D
Sbjct: 416 SQDKNDFELTTLPALVPVLSTATGDTLLLLIKRAELIINKTNAEHLVSHVLPLLLRAYND 475
Query: 181 TDPRLQEEVLRRTVPLSRQLDVKLLKQSVLPRVHGLALKTTVAAVRVNALRCLGDLVPSL 240
D R+QEEVL+R+ +++QLD ++++Q++LPRVHGLALKTTVAAVRVNAL CL +LV +L
Sbjct: 476 NDVRIQEEVLKRSTSVAKQLDGQVVRQAILPRVHGLALKTTVAAVRVNALLCLAELVQTL 535
Query: 241 DKEGILEILQTLRRCTAVDHTAPTLMCTLGVANAIFKQCGVEFAAEYVIPLVFPLLTAHQ 300
DK + EILQT++RCTAVD +APTLMCTL +ANAI KQ GVEF +E+V+PL+ PLLTA Q
Sbjct: 536 DKLAVTEILQTIQRCTAVDRSAPTLMCTLAIANAILKQYGVEFTSEHVLPLIIPLLTAQQ 595
Query: 301 LNVQQFAKYILFVKDITSKIEEKRGVTVTDNGNTEVKVSPSLANGIHSEPLSRGVGQTEQ 360
LNVQQFAKYILFVKDI KIEEKRGVTV D+G EVK +A+G+ + ++ +TE+
Sbjct: 596 LNVQQFAKYILFVKDILRKIEEKRGVTVNDSGVPEVKPG-CVADGLQFQTPTK---KTEK 651
Query: 361 IQTA--KGAAWDEDWGPTKKASTPSQSSDSNARMKQPSDPFDFSTQTKQPSALPFDFSTQ 418
+ +A AWDEDW K S P R P++ F+ T Q
Sbjct: 652 VASAAKNSPAWDEDWALPTKISAP--------RDPGPANSPQFNNSTVQ----------S 693
Query: 419 QPKPSSAIPQVTPATIXXXXXXXXXXXXXXXXXXXTSGSCVPVDIEWPPRKNTSSDFNAP 478
Q +++P PA VD+EWPPR++ ++
Sbjct: 694 QSSNRTSVPTTCPA----------------------------VDLEWPPRQSFNATAQPA 725
Query: 479 LSVSEQSKSGGLSSDGLADIDPFADWPPKASSGASILAVGHXXXXXX------------- 525
+ + +G ++ ++DPFA+WPP+ +S ++ H
Sbjct: 726 NDETRINAAGTPTTPSFDELDPFANWPPRPNSASTASGGFHNSTTTQPPINNSGSGLRNN 785
Query: 526 ---XXXXXXXXNIGFSGNSGSLGQMKTNQMSWSAKPNTTNLMAVNSTGNYLNQGNSALG- 581
N ++ + SL MK+ Q + + + + + N NQG + G
Sbjct: 786 LTDGRQFQTTNNDFWAFGNASLSSMKSQQETSGIRASNADPLTSFGIQNQ-NQGMPSFGS 844
Query: 582 --FGN--PIXXXXXXXXXXXXXQGPPRLAPPPSASVGRGRGRNQGQSALSRASRTPHSNV 637
+GN P Q +LAPPPS +VGRGRGR + +++S+ + +
Sbjct: 845 SSYGNQKPQADISSIFSSSRTEQSAMKLAPPPSIAVGRGRGRGRSGTSISKPNGSKQQQ- 903
Query: 638 SSEQPPILDLL 648
+EQP +LDLL
Sbjct: 904 -TEQPSLLDLL 913
>AT2G40730.1 | chr2:16990083-16996072 REVERSE LENGTH=799
Length = 798
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 1/226 (0%)
Query: 17 IPADLVVDLQRMLSVDVASRPSAMAFTGSSFFRNDTRLRALRFLDHLLERDNMQKTEFLK 76
IP L+ D QR+LS + R + + + + + + F+D L +D+++K F +
Sbjct: 252 IPKSLLPDYQRLLSSMPSRRLNTSKLLENGEYFQNKLVDTIHFMDILNLKDSVEKDTFFR 311
Query: 77 ALSDMWKDFDSRVLRYKVLPPLCAELRNMVMQPMILPMVLTIAESQDKGDFELSTLPALV 136
L ++ + ++ K+LP L + L L +L + DF + LP +V
Sbjct: 312 KLPNVAEQLPREIVLKKLLPLLASSLEFGSAAAPALTALLKMGSWLSTEDFSVKVLPTIV 371
Query: 137 PVFTSASGETLLLLVKHADLIIHKATQEHLISHVLPMLVRAYDDTDPRLQEEVLRRTVPL 196
+F S + L++H D + + + V P + + DT L+E L+ + L
Sbjct: 372 KLFASNDRAIRVSLLQHVDQFGESMSGQIVDEQVYPHVATGFADTSAFLRELTLKSMLVL 431
Query: 197 SRQLDVKLLKQSVLPRVHGLALKTTVAAVRVNALRCLGDLVPSLDK 242
+ +L + L S+L + L + A+R N LG++ L++
Sbjct: 432 APKLSQRTLSGSLLKYLSKLQVDEE-PAIRTNTTILLGNIATYLNE 476
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,920,491
Number of extensions: 515963
Number of successful extensions: 1659
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1651
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 543
Effective length of database: 8,227,889
Effective search space: 4467743727
Effective search space used: 4467743727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)