Os01g0613900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0052 and CofD family protein.
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Os01g0613900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0052 and CofD family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.55 | 0.264 | 8.74 | -0.866 | 0.272 | 0.779 | 0.38 | -0.349 | -0.373 | 7.92 | 78.22 | 1146 | -- | -- |
| 31.57 | 0.262 | 8.74 | -0.834 | 0.296 | 0.783 | 0.454 | -- | -0.376 | 8.07 | 80.58 | 1106 | -- | -- |
| 31.8 | 0.263 | 8.75 | -0.861 | 0.3 | 0.777 | -- | -0.479 | -0.381 | 7.48 | 79.38 | 1103 | -- | -- |
| 32.07 | 0.264 | 8.74 | -0.817 | 0.306 | 0.742 | -- | -- | -0.378 | 7.48 | 80.13 | 1106 | -- | -- |
| 35.26 | 0.277 | 8.75 | -0.835 | -- | 0.715 | -- | -0.259 | -0.376 | -- | 79.66 | 1244 | -- | -- |
| 42.98 | 0.307 | 8.75 | -0.701 | 0.276 | -- | -0.196 | -- | -0.405 | 4.82 | -- | -- | -- | -- |
| 43.05 | 0.307 | 8.75 | -0.7 | 0.276 | -- | -- | -- | -0.404 | 5.08 | -- | -- | -- | -- |
| 35.33 | 0.277 | 8.75 | -0.808 | -- | 0.694 | -- | -- | -0.376 | -- | 80.8 | 1257 | -- | -- |
| 48.19 | 0.323 | 8.73 | -- | 0.3 | 0.712 | -- | -- | -0.342 | 7.74 | 103.8 | 1090 | -- | -- |
| 47.06 | 0.321 | 8.75 | -0.69 | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
| 55.97 | 0.35 | 8.73 | -- | 0.264 | -- | -- | -- | -0.326 | 5.17 | -- | -- | -- | -- |
| 51.02 | 0.333 | 8.74 | -- | -- | 0.627 | -- | -- | -0.341 | -- | 115 | 1270 | -- | -- |
| 59.62 | 0.36 | 8.73 | -- | -- | -- | -- | -- | -0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 4 | 32.76 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 7 | 32.79 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 10 | 32.83 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 17 | 32.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 19 | 33.03 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 21 | 33.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 38 | 33.15 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 48 | 33.19 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 69 | 33.28 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 12 |
| 111 | 33.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 138 | 33.48 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 178 | 33.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 226 | 33.61 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 459 | 33.84 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 475 | 33.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 493 | 33.87 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 544 | 33.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 556 | 33.91 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 566 | 33.92 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 588 | 33.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 592 | 33.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 653 | 33.95 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 663 | 33.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 686 | 33.98 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 699 | 34.00 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 715 | 34.01 | humidity | 70 | 720 | > th | dose independent | sin | 15 | NA |
| 764 | 34.04 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 793 | 34.06 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 929 | 34.14 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 950 | 34.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 951 | 34.15 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 990 | 34.18 | radiation | 20 | 1440 | > th | dose independent | rect. | 7 | 7 |