BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0613900 Os01g0613900|AK119181
         (475 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34090.2  | chr2:14396283-14399170 REVERSE LENGTH=472          592   e-169

>AT2G34090.2 | chr2:14396283-14399170 REVERSE LENGTH=472
          Length = 471

 Score =  592 bits (1527), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/420 (71%), Positives = 335/420 (79%), Gaps = 26/420 (6%)

Query: 63  PPSLLVFSGGTAFNGVVEELKKVTTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 122
           PPSLLVFSGGT FNGVVEELKK+TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL
Sbjct: 51  PPSLLVFSGGTGFNGVVEELKKLTTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 110

Query: 123 RLSDESTSEALSVRTLLGHRLPLDPSEAKLEWYQIVEGEHALWDGVSQPYRETIRAFLVY 182
           RLSDESTSEAL+VR LLGHRLP+D  +AK +WY IVEG H+LWDGVS+PY ETIRAFL+Y
Sbjct: 111 RLSDESTSEALAVRRLLGHRLPIDAHQAKKDWYDIVEGNHSLWDGVSRPYSETIRAFLIY 170

Query: 183 FHNEILRRSAEMFCFTNGSIGNFFFAGARIFFQSLDAAIFLFSRVSQIPAESLVLPVIST 242
           F NEI RR  E FCF+NGSIGNFFFAGARIFFQSLDAAIFLFSRVS+IP +SLVLPVIST
Sbjct: 171 FQNEIHRRPNERFCFSNGSIGNFFFAGARIFFQSLDAAIFLFSRVSEIPCDSLVLPVIST 230

Query: 243 NDRLTLGCELWDGTIIRGQNEISHPSNGRKEVVNKDCNSCSALPSRIKRVFYMSSEGSNL 302
           NDRLTLGCEL DGTIIRGQNEISHP+ G  + V+K   S SALPS+IKRVFYMSSEG+NL
Sbjct: 231 NDRLTLGCELQDGTIIRGQNEISHPTTGTTQTVDKRHCSTSALPSKIKRVFYMSSEGNNL 290

Query: 303 LHEVFPEANRTVLEQLSKVDCIVYAMGSLFTSVCPSLVLRGIGETIASRSIPKVLLLNGS 362
           LHEVFP  N TVLEQL  VDCIVYAMGSLFTS+CPSLVL G+GE I+SRS  KVLLLNGS
Sbjct: 291 LHEVFPPVNPTVLEQLRSVDCIVYAMGSLFTSICPSLVLLGVGEIISSRSCRKVLLLNGS 350

Query: 363 HDRETTGLPASGFVTAITDSLNRTYGYPDKSLKNLPKDYVNALLVPKGGQIPLDIKNLSS 422
            DRET+   AS FVTAI D+LNRT+G  +  LKN P  Y+N LLVPK G+I +D+K LS 
Sbjct: 351 QDRETSRFTASCFVTAIADALNRTHGDTNIRLKNPPGYYINTLLVPKDGEIAVDLKQLSE 410

Query: 423 KGIFHVVT--------------------------VDSIHDGKTGIIFDPHSLIQALTSLI 456
           +GI+ VV+                          V+S+ D K GI+F+P SLI  L  L+
Sbjct: 411 QGIYDVVSISFLHLFPSLCAQQTLTVTSTLLQRVVESVGDPKHGILFNPSSLINTLAGLV 470



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,385,585
Number of extensions: 385856
Number of successful extensions: 840
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 373
Effective length of database: 8,310,137
Effective search space: 3099681101
Effective search space used: 3099681101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)