Os01g0612600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1644 family protein.
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Os01g0612600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1644 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.64 | 0.186 | 13.3 | 0.298 | 0.755 | -0.671 | -0.641 | -1.01 | -0.0848 | 3.43 | 9.658 | 79 | -- | -- |
| 16.22 | 0.188 | 13.3 | 0.443 | 0.764 | -0.677 | -0.373 | -- | -0.0458 | 3.51 | 8.446 | 66 | -- | -- |
| 16.56 | 0.19 | 13.3 | 0.387 | 0.771 | -0.622 | -- | -0.343 | -0.0697 | 3.51 | 8.849 | 70 | -- | -- |
| 16.64 | 0.19 | 13.3 | 0.445 | 0.769 | -0.658 | -- | -- | -0.0463 | 3.54 | 11.08 | 66 | -- | -- |
| 38.63 | 0.289 | 13.2 | 0.599 | -- | -1.16 | -- | 0.0686 | 0.0761 | -- | 20.97 | 75 | -- | -- |
| 20.67 | 0.213 | 13.3 | 0.307 | 0.954 | -- | -0.26 | -- | -0.14 | 3.4 | -- | -- | -- | -- |
| 20.88 | 0.214 | 13.3 | 0.311 | 0.953 | -- | -- | -- | -0.139 | 3.41 | -- | -- | -- | -- |
| 38.63 | 0.289 | 13.2 | 0.589 | -- | -1.16 | -- | -- | 0.0741 | -- | 20.76 | 75 | -- | -- |
| 21.34 | 0.215 | 13.3 | -- | 0.838 | -0.44 | -- | -- | -0.122 | 3.5 | 10.44 | 60 | -- | -- |
| 71.9 | 0.396 | 13.3 | 0.352 | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
| 23.43 | 0.226 | 13.3 | -- | 0.959 | -- | -- | -- | -0.174 | 3.41 | -- | -- | -- | -- |
| 46.42 | 0.317 | 13.3 | -- | -- | -1.06 | -- | -- | -0.0536 | -- | 23.99 | 50 | -- | -- |
| 75.16 | 0.405 | 13.3 | -- | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 4 | 14.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 83 | 15.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 98 | 15.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 108 | 15.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 126 | 15.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 135 | 15.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 149 | 15.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 161 | 15.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 169 | 15.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 177 | 15.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 178 | 15.66 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 179 | 15.66 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 201 | 15.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 217 | 15.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 253 | 15.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 308 | 16.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 329 | 16.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 340 | 16.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 346 | 16.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 365 | 16.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 16 |
| 435 | 16.21 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 442 | 16.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 459 | 16.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 481 | 16.30 | temperature | 15 | 10 | > th | dose dependent | sin | 19 | NA |
| 495 | 16.30 | radiation | 10 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 507 | 16.33 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 19 |
| 508 | 16.33 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 533 | 16.37 | radiation | 10 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 553 | 16.39 | radiation | 10 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 556 | 16.40 | radiation | 10 | 270 | < th | dose dependent | no | NA | NA |
| 615 | 16.46 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 682 | 16.53 | radiation | 10 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 711 | 16.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 789 | 16.63 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 790 | 16.64 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 849 | 16.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 916 | 16.71 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 23 |
| 975 | 16.76 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 23 |
| 989 | 16.77 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 1 |