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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0596700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : FBD domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.052) R2 : 0.0711
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.8 (0.708) R2dE : 0.0589 R2E : 0.0587
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.237 (0.11) R2dN8 : 0.0123 R2N8 : 0.0121
σ : 0.976
deviance : 439.2
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_____
C
peak time of C : --
E
wheather : wind
threshold : 3.143
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10
open length of G : 0.796

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
426.86 0.971 3.06 -0.0389 0.0673 3.29 -0.7 -12.9 -0.235 8.87 3.225 10 10 0.796
435.94 0.972 3.07 -0.0167 0.0719 3.73 -0.927 -- -0.244 8.87 3.198 9 10 0.734
428.48 0.964 3.06 -0.0613 0.0663 3.28 -- -12.9 -0.234 8.89 3.142 10 10 0.856
438.85 0.976 3.07 -0.0477 0.0733 3.76 -- -- -0.243 8.92 3.199 9 10 0.819
428.71 0.964 3.06 -0.0606 -- 3.31 -- -13.4 -0.232 -- 3.139 10 10 0.844
461.96 1.01 3.07 -0.0468 0.157 -- -0.993 -- -0.278 8.95 -- -- -- --
465.32 1.01 3.07 -0.0801 0.16 -- -- -- -0.278 9.34 -- -- -- --
439.15 0.976 3.07 -0.0477 -- 3.8 -- -- -0.242 -- 3.145 10 10 0.647
438.91 0.976 3.07 -- 0.0736 3.77 -- -- -0.238 8.97 3.198 10 10 0.819
466.82 1.01 3.08 -0.0809 -- -- -- -- -0.278 -- -- -- -- --
465.49 1.01 3.07 -- 0.16 -- -- -- -0.269 9.38 -- -- -- --
439.2 0.976 3.07 -- -- 3.8 -- -- -0.237 -- 3.143 10 10 0.796
466.99 1.01 3.07 -- -- -- -- -- -0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 429.05 wind 3 10 > th dose dependent rect. 10 1
2 430.43 humidity 90 10 < th dose dependent rect. 3 2
4 430.67 humidity 80 90 < th dose independent rect. 2 2
5 430.68 humidity 80 90 < th dose dependent rect. 2 2
8 431.15 humidity 90 10 < th dose independent rect. 3 1
16 432.71 wind 5 10 > th dose independent rect. 10 1
28 436.14 atmosphere 1015 1440 < th dose independent rect. 8 4
31 436.16 atmosphere 1015 1440 < th dose independent rect. 5 7
32 436.18 atmosphere 1015 1440 < th dose independent rect. 11 1
39 436.39 atmosphere 1015 1440 > th dose independent rect. 10 1
54 436.39 atmosphere 1015 1440 > th dose dependent rect. 10 1
70 436.45 wind 9 90 > th dose dependent rect. 22 12
73 436.59 wind 7 90 > th dose dependent rect. 8 1
75 436.82 wind 9 90 > th dose dependent rect. 20 14
82 437.15 wind 7 90 > th dose independent rect. 8 1
92 438.32 humidity 90 90 > th dose independent rect. 8 1
95 438.66 temperature 20 30 < th dose independent rect. 7 5
108 439.18 temperature 20 90 < th dose independent rect. 7 10
109 439.18 temperature 20 270 < th dose independent rect. 6 16
112 439.21 temperature 20 90 < th dose dependent rect. 6 15
119 439.62 humidity 90 90 > th dose dependent rect. 8 1
121 439.64 temperature 20 90 < th dose dependent rect. 7 4
127 440.03 wind 9 90 > th dose dependent rect. 1 9
151 440.20 temperature 20 30 < th dose dependent rect. 7 7
159 440.27 temperature 20 10 < th dose dependent rect. 7 5
176 440.43 temperature 20 270 < th dose independent sin 22 NA
191 440.61 temperature 20 90 < th dose dependent rect. 7 2
241 440.89 wind 5 10 > th dose dependent rect. 8 1
327 443.50 temperature 20 720 > th dose independent rect. 7 15
348 444.27 humidity 80 10 < th dose dependent rect. 22 1
350 444.28 wind 5 10 > th dose dependent rect. 21 1
362 444.45 wind 5 10 > th dose independent rect. 21 1
393 444.97 wind 7 90 > th dose independent rect. 23 11
397 445.07 temperature 20 1440 > th dose independent rect. 15 4
402 445.20 temperature 20 270 > th dose independent sin 21 NA
403 445.22 wind 3 90 > th dose dependent rect. 6 1
425 445.60 humidity 80 30 < th dose independent rect. 21 1
431 445.68 temperature 20 1440 < th dose independent rect. 18 1
432 445.70 temperature 20 1440 > th dose independent rect. 11 8
439 445.78 temperature 20 4320 < th dose independent rect. 21 1
461 446.05 wind 9 90 > th dose independent rect. 19 15
480 446.29 temperature 20 720 < th dose independent rect. 20 1
504 446.51 temperature 20 4320 > th dose independent rect. 21 1
505 446.51 temperature 20 4320 < th dose independent rect. 18 4
506 446.51 humidity 80 90 < th dose independent rect. 20 12
508 446.54 temperature 20 4320 < th dose independent rect. 16 6
514 446.61 temperature 20 4320 < th dose independent rect. 13 9
520 446.65 wind 3 90 > th dose independent rect. 6 1
523 446.74 humidity 80 1440 > th dose independent rect. 2 1
541 446.98 radiation 20 4320 < th dose independent rect. 17 11
545 446.99 temperature 20 720 > th dose independent rect. 7 18
576 447.18 wind 5 720 > th dose independent rect. 21 1
587 447.26 radiation 1 90 < th dose independent rect. 10 1
589 447.26 radiation 1 90 < th dose dependent rect. 10 1
602 447.33 temperature 20 1440 < th dose independent rect. 10 10
605 447.36 radiation 10 10 < th dose independent rect. 8 1
621 447.42 temperature 20 270 < th dose independent rect. 14 8
642 447.54 humidity 80 90 < th dose dependent rect. 6 1
657 447.59 temperature 20 720 < th dose dependent sin 20 NA
664 447.61 temperature 20 10 < th dose dependent rect. 7 16
772 448.04 radiation 20 4320 < th dose independent rect. 17 1
780 448.05 temperature 20 720 > th dose independent rect. 5 20
782 448.06 radiation 1 10 < th dose independent rect. 7 5
787 448.06 radiation 1 10 < th dose dependent rect. 7 5
816 448.24 temperature 20 270 > th dose independent rect. 7 23
821 448.27 temperature 20 720 < th dose dependent rect. 20 1
843 448.40 wind 5 90 > th dose independent rect. 21 1
845 448.43 temperature 20 720 < th dose dependent rect. 9 16
852 448.48 temperature 20 10 < th dose dependent rect. 22 1
879 448.64 radiation 20 4320 < th dose independent rect. 17 5
899 448.73 atmosphere 1005 10 > th dose dependent rect. 3 1
906 448.78 wind 7 720 > th dose dependent rect. 20 1
912 448.81 temperature 20 720 < th dose dependent rect. 19 6
963 448.97 atmosphere 1000 10 < th dose independent rect. 3 1
970 448.97 atmosphere 1000 10 < th dose dependent rect. 3 1
985 448.99 temperature 20 720 < th dose dependent rect. 20 3