BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0596700 Os01g0596700|AK107371
         (530 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13570.1  | chr1:4642528-4643930 REVERSE LENGTH=417             53   4e-07
AT3G26922.1  | chr3:9922858-9923891 FORWARD LENGTH=307             53   5e-07

>AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417
          Length = 416

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 23/204 (11%)

Query: 74  DFIGSLPGHVRSAIVSRLPVADAAARTGVLSSSQWNGLWSS-TPLVFQDSDLILAANFTS 132
           DFI  LP  +   I++RL + D A RT VL SS+W   WS+ T LVF D   +  +N   
Sbjct: 6   DFISDLPQSIIENILTRLSIRD-AIRTSVL-SSKWRYKWSTLTDLVF-DEKCVSPSNDRC 62

Query: 133 VAP--VAATVSRVIENHPGPFHTVTLTSYFPESERDTFAGWIRAVAAKGVRDLTLHNIPW 190
           V    +   ++ V+  H GP H   L++ F +   D    W+  ++  G+++L L     
Sbjct: 63  VVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPDI-DQWLLFLSRNGIKELVLK--LG 119

Query: 191 SGLHVLPADLLQCCAALERLRVCVWRFPATAGVLHXXXXXXXXXXXXSFPRLRELVLNRS 250
            G   +PA L   C  L  L +C   F                     F  L+ L L++ 
Sbjct: 120 EGEFRVPACLFN-CLKLTCLELCHCEFDPPQ-------------YFKGFSYLKSLNLHQI 165

Query: 251 AIEEADLENVVACSPALRTLVLAF 274
            +    +E++++  P L  L L++
Sbjct: 166 LVAPEVIESLISGCPLLEFLSLSY 189



>AT3G26922.1 | chr3:9922858-9923891 FORWARD LENGTH=307
          Length = 306

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 72  GEDFIGSLPGHVRSAIVSRLPVADAAARTGVLSSSQWNGLWSSTPLVFQDSDLILAANFT 131
            ED I  LP  +   I+S LPV D    T VLS   W  LW   P +  D +     N +
Sbjct: 12  NEDRISDLPEALLLQILSMLPVKDVVT-TSVLSKP-WRSLWKLVPTLKFDYE----NNQS 65

Query: 132 SVAPVAATVSRVIENHPGPF-HTVTLTSYFPESERDTFAGWIRAVAAKGVRDLTLHNIPW 190
                +  V R++ ++  PF  ++ L   F E        WI    A+ VRDL LH    
Sbjct: 66  EDETYSEIVCRLLLSNKAPFLESLHLGFRFGECRSVEVGMWIGIAYARHVRDLVLHVESV 125

Query: 191 SGLHVLPADLLQCCAALERLRVCVW 215
            G  + P  L   C  LE L +  W
Sbjct: 126 KGSFIFPTGLYN-CETLESLTLRSW 149



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,911,710
Number of extensions: 430354
Number of successful extensions: 1060
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1069
Number of HSP's successfully gapped: 2
Length of query: 530
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 427
Effective length of database: 8,282,721
Effective search space: 3536721867
Effective search space used: 3536721867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)