Os01g0595300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Malate synthase-like family protein.
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Os01g0595300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Malate synthase-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.56 | 0.213 | 8.96 | 0.832 | 0.248 | -0.445 | -0.329 | -0.779 | -0.109 | 2.54 | 26.4 | 73 | -- | -- |
| 21.29 | 0.217 | 8.98 | 0.709 | 0.237 | -0.384 | -0.6 | -- | -0.134 | 2.39 | 26.4 | 73 | -- | -- |
| 20.82 | 0.214 | 8.96 | 0.88 | 0.258 | -0.454 | -- | -0.991 | -0.0989 | 2.14 | 26.5 | 70 | -- | -- |
| 22.51 | 0.221 | 8.98 | 0.716 | 0.238 | -0.402 | -- | -- | -0.135 | 2.33 | 26.7 | 42 | -- | -- |
| 23.46 | 0.226 | 8.95 | 0.826 | -- | -0.703 | -- | -1.38 | -0.0662 | -- | 21.57 | 272 | -- | -- |
| 23.48 | 0.227 | 8.96 | 0.8 | 0.136 | -- | -0.639 | -- | -0.0503 | 2.76 | -- | -- | -- | -- |
| 24.89 | 0.234 | 8.96 | 0.815 | 0.133 | -- | -- | -- | -0.0463 | 2.36 | -- | -- | -- | -- |
| 24.2 | 0.229 | 8.97 | 0.724 | -- | -0.329 | -- | -- | -0.116 | -- | 25.8 | 898 | -- | -- |
| 34.77 | 0.275 | 9 | -- | 0.388 | -0.852 | -- | -- | -0.239 | 2.43 | 52.99 | 17 | -- | -- |
| 25.94 | 0.238 | 8.96 | 0.821 | -- | -- | -- | -- | -0.0431 | -- | -- | -- | -- | -- |
| 42.39 | 0.305 | 8.98 | -- | 0.149 | -- | -- | -- | -0.137 | 2.45 | -- | -- | -- | -- |
| 30.3 | 0.256 | 9.01 | -- | -- | -0.602 | -- | -- | -0.274 | -- | 23.1 | 47520 | -- | -- |
| 43.7 | 0.309 | 8.98 | -- | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.71 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 2 | 19.71 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 8 | 19.71 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 37 | 19.84 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 39 | 19.85 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 103 | 19.92 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 112 | 19.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 115 | 19.96 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 119 | 19.98 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 121 | 19.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 122 | 19.99 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 123 | 19.99 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 125 | 19.99 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 130 | 20.01 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 169 | 20.03 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 173 | 20.03 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 193 | 20.05 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 196 | 20.06 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 197 | 20.07 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 202 | 20.08 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 24 | 3 |
| 216 | 20.10 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 227 | 20.12 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 237 | 20.13 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 242 | 20.13 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 243 | 20.14 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 250 | 20.14 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 271 | 20.17 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 272 | 20.17 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 275 | 20.18 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 276 | 20.18 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 293 | 20.19 | temperature | 20.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 294 | 20.19 | temperature | 20.0 | 720 | < th | dose independent | sin | 20 | NA |
| 382 | 20.27 | temperature | 20.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 383 | 20.27 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 396 | 20.28 | temperature | 20.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 485 | 20.34 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 528 | 20.37 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 583 | 20.40 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 593 | 20.41 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 611 | 20.41 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 647 | 20.43 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 697 | 20.45 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 706 | 20.45 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 717 | 20.46 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 726 | 20.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 747 | 20.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 776 | 20.47 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 786 | 20.47 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 791 | 20.47 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 803 | 20.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 812 | 20.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 832 | 20.48 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 20 |
| 848 | 20.48 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 866 | 20.49 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 891 | 20.49 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 897 | 20.50 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 910 | 20.50 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 944 | 20.50 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 947 | 20.51 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 13 | NA |