BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0595300 Os01g0595300|AK071288
(560 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720 173 3e-43
AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786 140 2e-33
AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751 127 1e-29
>AT1G64260.1 | chr1:23847756-23849915 FORWARD LENGTH=720
Length = 719
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/498 (27%), Positives = 225/498 (45%), Gaps = 31/498 (6%)
Query: 16 VVKSDRSRFIAKCAREGCPWRVHVAKC--HGVPTFTVRTLHGEHTCDGVRDLHHHQATVG 73
V ++++ + +C R C W + A+ HG+ T T G HTC + +
Sbjct: 214 VRETEKEMYTFECVRWKCKWSLRAARMEEHGLVEITKYT--GPHTCSHE---YPNDFESE 268
Query: 74 WVARSVEATLRDNPQYKPKEILQDIREQHGVAVSYMQAWRGKERSMAAVHGTLEDGYRFL 133
+ A +E +R P E+ + +E+ G + + GK + V G + +R +
Sbjct: 269 FAADEIERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFGDEDQSFRVM 328
Query: 134 PAYCEQIVQTNPGSVAIYKGTGPD---NSFQRLFVSFHASIHGFLNACRPLLEIDKADLK 190
P +N V P+ SF+ +F SF SI GF CRPL+ +D L
Sbjct: 329 PKLISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGF-QHCRPLIVVDTKSLN 387
Query: 191 GKYLGTLLCASAVDAENMMFPLAFGIVDAESDENWMWFFSELRKMLGVNTDKMPVLTILS 250
GKY L+ AS VDA N FPLAF + S ++W WFF+++R+ + D + + L
Sbjct: 388 GKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIREKVTQRKDLCLISSPLR 447
Query: 251 ERQSQVVEAVEV-NFPTAFHGFCLRYVSENFRDEFKNPKLLNIFWSAVYALTAAEFDSKV 309
+ + V E + P A H FCL ++ F F++ L ++ A EFDS +
Sbjct: 448 DIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYM 507
Query: 310 NDMVQVQ-DVMPWFQRFPPNLWAVSYFEGIRYGHFNLGITEILYNWAMECHEFPIVQTVE 368
ND+ + + W + P + WA+++ G+RYG + E L+ C FP TV
Sbjct: 508 NDIKEKNPEAWKWLDQIPRHKWALAHDSGLRYGIIEID-REALF---AVCRGFPYC-TVA 562
Query: 369 HIKHQLTCWFVERQNLALSYNSILV----------PSAEKLISEAIADSGCYQVLRANKV 418
+ + R + S +SI P +KL E + DS Y + + +
Sbjct: 563 MTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTEPFMDKL-EEFMTDSIPYVITQLERD 621
Query: 419 EFEIV-SSERTN-IVDTQARCCSCRRWQIYGIPCAHAVAALLSCGEDPRLYAHECFSIMK 476
F++ SSE+ IV C+CR++Q Y PC HA+A +P Y EC+++ +
Sbjct: 622 SFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQ 681
Query: 477 YRETYSQPIYSIPDRSQW 494
Y +TY+ +PD + W
Sbjct: 682 YCKTYAATFSPVPDVAAW 699
>AT1G49920.1 | chr1:18481798-18484233 REVERSE LENGTH=786
Length = 785
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/539 (23%), Positives = 233/539 (43%), Gaps = 62/539 (11%)
Query: 1 RAVKDMAIAMHFELRVVKSDRSRFIAKCAREGCPWRVHVAKCHGVPTFTVRTLHGEHTCD 60
+AV +I + + ++++ ++ +C R C W + ++ F + G H C
Sbjct: 194 KAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLFEITECSGPHDC- 252
Query: 61 GVRDLHHHQATVGWVARSVEATLRDNPQYKPKEILQDIREQHGVAV-------SYMQAWR 113
H + + +E +R P E+ + ++ G A+ S
Sbjct: 253 --YPEHLNDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVVEHCSEGLVED 310
Query: 114 GKERSMAAVHGTLEDGYRFLPAYCEQIVQTNPGSVAIYKGTG----PDN-SFQRLFVSFH 168
K +++ G + +R +P ++ ++ G + ++ P++ SF+ LF +F
Sbjct: 311 AKVKAIKRFFGDWDQSFRLIPKLM-SVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFS 369
Query: 169 ASIHGFLNACRPLLEIDKADLKGKYLGTLLCASAVDAENMMFPLAFGIVDAESDENWMWF 228
SI GF + CRPL+ +D +L GKY L+ ASA DA N FPLAF + S ++W WF
Sbjct: 370 QSIQGFQH-CRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWF 428
Query: 229 FSELRKMLG-------VNTDKMPVLTILSERQSQVVEAVEVNFPTAFHGFCLRY------ 275
+ +R+ + +++ +L +++E SQ E P A+H FCL +
Sbjct: 429 LTRIREKVTQRQGICLISSPDPDILAVINEPGSQWKE------PWAYHRFCLYHLCSKLC 482
Query: 276 -VSENFRDEFKNPKLLNIFWSAVYALTAAEFDSKVNDMVQVQ-DVMPWFQRFPPNLWAVS 333
VS F ++ L++ A + EFDS + ++ + + W +FPP+ WA++
Sbjct: 483 SVSPGF--DYNMHFLVD---EAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWALA 537
Query: 334 YFEGIRYGHFNLGITEILYNWAMECHEFPIVQTVEHIKHQLTCWFVERQNL---ALSYNS 390
+ +G RYG + TE L+ + + V + QL F E L +L +
Sbjct: 538 HDDGRRYGIMRID-TEALFAVCKRFRKVAMAGGVMLLFGQLKDAFAESFKLSRGSLKHGD 596
Query: 391 ILVPSAEKLISEAIADS------------GCYQVLRANKVEFEIV---SSERTNIVDTQA 435
+ + + E DS YQV A K + ++ + + IV
Sbjct: 597 VYTEHVMEKLEEFETDSDTWVITITPLERDAYQVSMAPKKKTRLMGQSNDSTSGIVQLND 656
Query: 436 RCCSCRRWQIYGIPCAHAVAALLSCGEDPRLYAHECFSIMKYRETYSQPIYSIPDRSQW 494
C+C +Q PC HA+A +P Y +C+++ +Y +TYS +P+ S W
Sbjct: 657 TTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKFSPVPELSAW 715
>AT1G64255.1 | chr1:23844954-23847206 FORWARD LENGTH=751
Length = 750
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/500 (22%), Positives = 200/500 (40%), Gaps = 33/500 (6%)
Query: 16 VVKSDRSRFIAKCAREGCPWRVHVAKCHGVPTFTVRTLHGEHTCDGV--RDLHHHQATVG 73
V ++ + +I +C R C W + A+ + G HTC + D T
Sbjct: 221 VRETAKDEYIFECIRWKCKWSLGAARMKKHGLVEIIKYTGPHTCHPIVPEDFKSEFET-- 278
Query: 74 WVARSVEATLRDNPQYKPKEILQDIREQHGVAVSYMQAWRGKERSMAAVHGTLEDGYRFL 133
+E +R P E+ + +++ G + KE+++ V G + +
Sbjct: 279 ---DEIERAVRYMPTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFGDWDQSFEDF 335
Query: 134 PAYCEQIVQTNPGSVAIYKGTGPD---NSFQRLFVSFHASIHGFLNACRPLLEIDKADLK 190
P + +N V P+ SF +F +F SI GF + CRPL+ +D +L
Sbjct: 336 PKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQH-CRPLIVVDTKNLN 394
Query: 191 GKYLGTLLCASAVDAENMMFPLAFGIVDAESDENWMWFFSELRKMLG-------VNTDKM 243
+Y L+ AS VDA N FPLAF + S + W WF + +R+ + +++
Sbjct: 395 CEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHP 454
Query: 244 PVLTILSERQSQVVEAVEVNFPTAFHGFCLRYVSENFRDEFKNPKLLNIFWSAVYALTAA 303
++ +++E SQ E P A+H F L + F F + L A
Sbjct: 455 DIIAVVNESGSQWQE------PWAYHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKD 508
Query: 304 EFDSKVNDMVQVQ-DVMPWFQRFPPNLWAVSYFEGIRYGHFNLGITEIL-----YNWAME 357
EF S +ND+ + + W +FP N WA+++ G RYG + + + A
Sbjct: 509 EFVSYMNDIKEKNPEARKWLDQFPQNRWALAHDNGRRYGIMEINTKALFAVCNAFEQAGH 568
Query: 358 CHEFPIVQTVEHIKHQLTCWFV---ERQNLALSYNSILVPSAEKLISEAIADSGCYQVLR 414
++ + ++ + F N Y ++ E+ + + S L
Sbjct: 569 VVTGSVLLLFDELRSKFDKSFSCSRSSLNCGDVYTEPVMDKLEEFRTTFVTYSYIVTPLD 628
Query: 415 ANKVEFEIVSSERTNIVDTQARCCSCRRWQIYGIPCAHAVAALLSCGEDPRLYAHECFSI 474
N + + IV C+C +Q Y PC HA+A +P Y +C+++
Sbjct: 629 NNAFQVATALDKGECIVQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCYTL 688
Query: 475 MKYRETYSQPIYSIPDRSQW 494
+ + TY+ +P+ S W
Sbjct: 689 ERLKRTYATIFSHVPEMSAW 708
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,915,289
Number of extensions: 480229
Number of successful extensions: 1296
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 3
Length of query: 560
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 456
Effective length of database: 8,255,305
Effective search space: 3764419080
Effective search space used: 3764419080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)