Os01g0585300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1118 family protein.
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Os01g0585300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1118 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.09 | 0.333 | 14.9 | -2.18 | 1.54 | -2.56 | 1.64 | 11.9 | -0.606 | 7.08 | 1000 | 285 | -- | -- |
| 51.83 | 0.338 | 14.7 | -1.44 | 1.53 | -0.437 | 1.64 | -- | -0.609 | 7.02 | 1000 | 285 | -- | -- |
| 57.08 | 0.352 | 14.9 | -2.14 | 1.54 | -2.51 | -- | 11.7 | -0.608 | 7.1 | 1000 | 284 | -- | -- |
| 58.52 | 0.359 | 14.7 | -1.41 | 1.54 | -0.442 | -- | -- | -0.611 | 7.03 | 1000 | 284 | -- | -- |
| 180.2 | 0.629 | 14.9 | -2.05 | -- | -3.08 | -- | 14.4 | -0.588 | -- | 998.7 | 215 | -- | -- |
| 57.06 | 0.354 | 14.7 | -1.36 | 1.53 | -- | 1.63 | -- | -0.638 | 7.05 | -- | -- | -- | -- |
| 64.04 | 0.375 | 14.7 | -1.33 | 1.53 | -- | -- | -- | -0.641 | 7.06 | -- | -- | -- | -- |
| 182 | 0.628 | 14.8 | -1.36 | -- | -0.527 | -- | -- | -0.578 | -- | 998.8 | 48 | -- | -- |
| 107.9 | 0.484 | 14.7 | -- | 1.53 | -0.26 | -- | -- | -0.457 | 7.07 | 1003 | 280 | -- | -- |
| 187.61 | 0.64 | 14.8 | -1.3 | -- | -- | -- | -- | -0.614 | -- | -- | -- | -- | -- |
| 110.52 | 0.492 | 14.7 | -- | 1.52 | -- | -- | -- | -0.494 | 7.12 | -- | -- | -- | -- |
| 230.15 | 0.709 | 14.7 | -- | -- | -0.303 | -- | -- | -0.451 | -- | 998.8 | 48 | -- | -- |
| 232.05 | 0.711 | 14.7 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.04 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 17 |
| 2 | 47.25 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 15 |
| 5 | 47.33 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 10 | 47.52 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 11 | NA |
| 21 | 47.62 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 14 |
| 55 | 48.13 | atmosphere | 1000 | 270 | < th | dose independent | sin | 15 | NA |
| 58 | 48.17 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 101 | 48.55 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 15 | 14 |
| 127 | 48.72 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 18 |
| 156 | 48.84 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 20 |
| 161 | 48.85 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 12 | 23 |
| 172 | 48.92 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 18 |
| 188 | 48.98 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 191 | 49.00 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 193 | 49.01 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 23 |
| 199 | 49.02 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 232 | 49.14 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 249 | 49.22 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 254 | 49.24 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 262 | 49.28 | atmosphere | 1000 | 30 | > th | dose independent | sin | 13 | NA |
| 311 | 49.40 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 17 | 2 |
| 356 | 49.52 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 14 | 18 |
| 360 | 49.53 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 16 | 16 |
| 385 | 49.57 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 424 | 49.66 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 17 | 5 |
| 425 | 49.66 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 14 | 10 |
| 443 | 49.68 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 598 | 49.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 629 | 49.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 660 | 50.04 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 679 | 50.07 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 10 | 15 |
| 719 | 50.12 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 11 | 14 |
| 729 | 50.14 | wind | 1 | 90 | < th | dose independent | rect. | 24 | 1 |
| 768 | 50.17 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 802 | 50.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 805 | 50.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 834 | 50.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 861 | 50.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 867 | 50.31 | atmosphere | 1000 | 270 | > th | dose independent | no | NA | NA |
| 886 | 50.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 915 | 50.36 | atmosphere | 1000 | 270 | < th | dose independent | no | NA | NA |
| 930 | 50.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 9 |