BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0585300 Os01g0585300|AK071353
         (187 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74730.1  | chr1:28078995-28079831 FORWARD LENGTH=199          105   2e-23

>AT1G74730.1 | chr1:28078995-28079831 FORWARD LENGTH=199
          Length = 198

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 58/81 (71%)

Query: 32  VTAMAPQKKVNRYDEKWSKQWFGAGIFAEGSEEVEVDVFKKLERRKVLSTVEKAGLLSRA 91
           V AMAPQKKVN+YD KW KQW+GAG+F EGSE++ VDVFKKLE+RKVLS VEK+GLLS+A
Sbjct: 43  VVAMAPQKKVNKYDAKWKKQWYGAGLFFEGSEQINVDVFKKLEKRKVLSNVEKSGLLSKA 102

Query: 92  XXXXXXXXXXXXXXXXXKAED 112
                            KAED
Sbjct: 103 EGLGLTLSSLEKLKVFSKAED 123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.124    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,444,226
Number of extensions: 42244
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 108 (46.2 bits)