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Os01g0574800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0221) R2 : 0.643
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.57 (0.0557) R2dC : 0.623 R2C : 0.624
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.205 (0.0466) R2dN8 : 0.0195 R2N8 : 0.02
σ : 0.418
deviance : 79.83
__
_____
C
peak time of C : 3.38
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
65.06 0.379 12.9 0.283 1.13 0.795 0.62 -0.716 0.29 5.14 23.41 75 -- --
67.15 0.382 12.9 0.294 1.12 0.822 0.425 -- 0.289 5.37 21.54 71 -- --
65.93 0.378 12.9 0.276 1.13 0.785 -- -0.589 0.285 5.17 21.98 72 -- --
67.53 0.383 12.9 0.296 1.13 0.784 -- -- 0.286 5.2 21.68 71 -- --
83.35 0.425 12.9 0.258 -- 1.46 -- -0.215 0.308 -- 10 414 -- --
77.98 0.414 12.9 0.265 1.57 -- 0.0388 -- 0.234 3.38 -- -- -- --
77.99 0.414 12.9 0.264 1.57 -- -- -- 0.234 3.38 -- -- -- --
83.51 0.426 12.9 0.255 -- 1.45 -- -- 0.31 -- 10 415 -- --
69.81 0.389 12.9 -- 1.14 0.763 -- -- 0.253 5.18 20 71 -- --
216.23 0.687 12.9 0.33 -- -- -- -- 0.276 -- -- -- -- --
79.83 0.418 12.9 -- 1.57 -- -- -- 0.205 3.38 -- -- -- --
85.21 0.43 12.9 -- -- 1.47 -- -- 0.288 -- 10 421 -- --
219.11 0.691 12.9 -- -- -- -- -- 0.239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.00 temperature 10.0 270 > th dose dependent rect. 17 15
40 59.74 radiation 30.0 90 < th dose dependent rect. 11 12
42 59.93 temperature 10.0 90 > th dose dependent rect. 17 6
43 59.97 radiation 20.0 30 < th dose dependent sin 19 NA
57 60.40 atmosphere 1015.0 90 < th dose dependent rect. 17 6
59 60.43 radiation 30.0 90 < th dose dependent rect. 13 10
60 60.45 radiation 10.0 30 < th dose dependent rect. 6 17
61 60.46 temperature 10.0 270 > th dose dependent rect. 1 9
72 60.61 radiation 20.0 30 < th dose dependent rect. 8 15
99 61.05 temperature 15.0 270 > th dose dependent rect. 17 3
116 61.36 atmosphere 1015.0 90 < th dose independent rect. 17 6
134 61.55 radiation 20.0 90 < th dose independent rect. 11 12
141 61.63 temperature 10.0 270 > th dose dependent rect. 15 7
145 61.71 atmosphere 995.0 90 > th dose independent rect. 17 6
154 61.84 radiation 20.0 90 < th dose dependent rect. 15 8
155 61.86 radiation 10.0 90 > th dose independent sin 20 NA
157 61.86 atmosphere 1015.0 270 < th dose dependent rect. 17 2
158 61.87 temperature 10.0 90 > th dose independent rect. 17 6
159 61.87 radiation 20.0 90 < th dose independent rect. 17 6
162 61.87 temperature 10.0 90 > th dose independent rect. 23 18
164 61.88 humidity 50.0 90 > th dose independent rect. 17 6
165 61.88 precipitation 0.1 90 < th dose independent rect. 17 6
166 61.88 wind 9.0 90 < th dose independent rect. 23 18
168 61.88 precipitation 0.1 90 < th dose dependent rect. 17 6
189 62.03 radiation 40.0 90 < th dose dependent rect. 17 18
190 62.04 radiation 1.0 30 < th dose independent sin 21 NA
192 62.06 temperature 20.0 90 > th dose independent rect. 17 6
193 62.06 radiation 40.0 90 < th dose dependent rect. 17 6
195 62.07 wind 1.0 90 > th dose independent rect. 17 6
212 62.17 precipitation 0.1 90 < th dose independent rect. 23 18
214 62.17 precipitation 0.1 90 < th dose dependent rect. 23 18
218 62.20 radiation 1.0 10 < th dose independent rect. 7 16
220 62.23 wind 9.0 90 < th dose independent rect. 17 6
244 62.41 radiation 20.0 90 < th dose independent rect. 13 10
257 62.49 radiation 1.0 10 < th dose independent rect. 11 12
263 62.49 radiation 20.0 90 < th dose dependent rect. 3 20
264 62.49 radiation 40.0 30 < th dose dependent rect. 17 23
273 62.54 atmosphere 1015.0 270 < th dose independent rect. 15 6
275 62.54 atmosphere 1015.0 270 < th dose dependent rect. 15 6
280 62.58 radiation 10.0 90 < th dose independent rect. 9 14
295 62.63 radiation 1.0 10 < th dose independent rect. 13 10
300 62.64 radiation 30.0 270 < th dose independent rect. 13 8
319 62.69 radiation 40.0 270 < th dose independent rect. 2 19
320 62.69 radiation 40.0 270 < th dose independent rect. 1 21
324 62.70 atmosphere 995.0 90 > th dose independent rect. 23 18
326 62.70 radiation 40.0 30 < th dose dependent rect. 17 21
332 62.73 radiation 40.0 90 < th dose dependent rect. 17 16
344 62.77 radiation 10.0 10 < th dose dependent rect. 4 19
357 62.83 precipitation 0.1 270 < th dose independent rect. 15 6
360 62.83 precipitation 0.1 270 < th dose dependent rect. 15 6
361 62.84 temperature 20.0 270 > th dose independent rect. 3 17
374 62.88 radiation 1.0 10 < th dose independent rect. 15 8
382 62.93 wind 1.0 270 > th dose independent rect. 15 6
399 62.96 radiation 10.0 90 < th dose independent rect. 15 8
406 62.98 radiation 40.0 270 < th dose independent rect. 11 10
410 62.99 temperature 10.0 270 > th dose independent rect. 15 6
411 62.99 temperature 10.0 270 > th dose independent rect. 21 18
417 63.03 wind 9.0 270 < th dose independent rect. 21 18
430 63.09 radiation 40.0 270 < th dose independent rect. 15 6
435 63.12 radiation 1.0 90 > th dose dependent sin 18 NA
441 63.14 precipitation 0.1 270 < th dose independent rect. 17 2
442 63.14 precipitation 0.1 270 < th dose dependent rect. 17 2
453 63.16 precipitation 0.1 270 < th dose independent rect. 21 18
454 63.16 radiation 1.0 10 < th dose independent rect. 4 19
457 63.16 atmosphere 1015.0 10 < th dose dependent rect. 18 5
460 63.16 precipitation 0.1 270 < th dose dependent rect. 21 18
477 63.22 wind 1.0 270 > th dose independent rect. 17 2
488 63.25 atmosphere 995.0 270 > th dose independent rect. 21 18
502 63.30 wind 9.0 270 < th dose independent rect. 15 6
503 63.31 temperature 10.0 270 > th dose independent rect. 17 2
505 63.31 atmosphere 1010.0 270 < th dose independent rect. 17 2
507 63.31 radiation 20.0 270 < th dose independent rect. 17 2
510 63.31 temperature 20.0 270 > th dose independent rect. 2 8
512 63.31 temperature 10.0 270 > th dose independent rect. 19 22
527 63.36 temperature 20.0 270 > th dose independent rect. 16 17
536 63.43 wind 9.0 270 < th dose independent rect. 19 22
548 63.46 wind 9.0 270 < th dose independent rect. 17 2
593 63.62 radiation 40.0 270 < th dose dependent rect. 17 2
611 63.64 radiation 10.0 90 > th dose independent rect. 9 23
617 63.65 temperature 10.0 10 > th dose dependent rect. 3 9
643 63.71 temperature 25.0 30 > th dose independent rect. 18 15
651 63.73 temperature 10.0 1440 > th dose independent rect. 18 6
654 63.73 humidity 50.0 1440 > th dose independent rect. 18 6
656 63.73 radiation 20.0 1440 < th dose independent rect. 18 6
668 63.73 temperature 10.0 1440 > th dose independent rect. 24 18
673 63.74 radiation 10.0 90 > th dose independent rect. 9 9
694 63.76 humidity 90.0 270 < th dose independent rect. 17 2
695 63.76 humidity 60.0 270 > th dose independent rect. 1 10
696 63.76 radiation 40.0 90 < th dose independent rect. 17 18
708 63.78 wind 9.0 270 < th dose independent rect. 20 20
709 63.78 temperature 10.0 270 > th dose independent rect. 20 20
719 63.81 radiation 40.0 270 < th dose dependent rect. 13 7
725 63.82 radiation 40.0 270 < th dose dependent rect. 15 5
754 63.89 radiation 1.0 43200 < th dose dependent rect. 19 4
760 63.90 radiation 20.0 90 < th dose independent rect. 17 16
788 63.96 radiation 20.0 90 < th dose independent rect. 17 18
802 63.99 radiation 40.0 10 < th dose dependent rect. 18 16
809 64.00 humidity 90.0 270 < th dose dependent rect. 22 17
812 64.01 precipitation 0.1 270 < th dose independent rect. 20 20
816 64.01 precipitation 0.1 270 < th dose dependent rect. 20 20
820 64.03 humidity 50.0 270 > th dose independent rect. 17 2
847 64.08 radiation 20.0 10 < th dose independent rect. 18 20
851 64.09 humidity 50.0 90 > th dose independent rect. 17 16
860 64.12 atmosphere 995.0 270 > th dose independent rect. 15 6
862 64.12 precipitation 0.1 270 < th dose independent rect. 19 22
867 64.12 precipitation 0.1 270 < th dose dependent rect. 19 22
870 64.13 wind 9.0 270 < th dose dependent rect. 17 2
878 64.14 radiation 40.0 270 < th dose dependent rect. 2 18
906 64.20 radiation 40.0 90 < th dose independent rect. 17 16
913 64.22 atmosphere 995.0 90 > th dose independent rect. 17 16
935 64.27 temperature 10.0 720 > th dose dependent rect. 24 5
945 64.28 atmosphere 1015.0 90 < th dose independent rect. 17 16
958 64.29 radiation 20.0 90 < th dose dependent rect. 2 23
960 64.30 atmosphere 995.0 270 > th dose independent rect. 17 2
968 64.32 temperature 10.0 90 > th dose dependent sin 9 NA
989 64.38 temperature 10.0 270 > th dose dependent sin 11 NA
993 64.39 temperature 25.0 10 > th dose independent rect. 18 17
995 64.40 wind 9.0 90 < th dose independent rect. 9 8