BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0574800 Os01g0574800|AK067593
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11890.1 | chr5:3831770-3832633 FORWARD LENGTH=288 77 1e-14
AT1G17620.1 | chr1:6062313-6063107 FORWARD LENGTH=265 61 8e-10
AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253 54 1e-07
AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261 52 3e-07
AT5G22870.1 | chr5:7647056-7647679 REVERSE LENGTH=208 52 4e-07
AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249 50 1e-06
AT4G01110.1 | chr4:480176-481056 REVERSE LENGTH=262 48 5e-06
AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240 48 7e-06
>AT5G11890.1 | chr5:3831770-3832633 FORWARD LENGTH=288
Length = 287
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 31/223 (13%)
Query: 81 LWMTLVVVGLVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDAVTSR-----IE 135
W L+++ L + AIAA YV YHP+ P+F+V S+R++ +N++ S +
Sbjct: 84 FWSILIILILALMTAIAATAMYVIYHPRPPSFSVPSIRISRVNLTTSSDSSVSHLSSFFN 143
Query: 136 FTVTARNPNDKXXXXXXXXXXXXXXXXXXXX--XXTVPGFVHPAGNTTVIKG--DASAAA 191
FT+ + NPN TVP F GN T G S AA
Sbjct: 144 FTLISENPNQHLSFSYDPFTVTVNSAKSGTMLGNGTVPAFFSDNGNKTSFHGVIATSTAA 203
Query: 192 ATVDPLVANGLRSRKSHA---MSVEMDSKVGFQIGRFKSKRINVRVLCAGFTAALAKNTX 248
+DP A LRS + A +EM +KV +G+ KS+ + ++V C GF + K
Sbjct: 204 RELDPDEAKHLRSDLTRARVGYEIEMRTKVKMIMGKLKSEGVEIKVTCEGFEGTIPKG-- 261
Query: 249 XXXXXXXXXXXXXXXXXXXXXXXXXXTTDAKCKLRVKIWIWTF 291
T K L VK+W W+F
Sbjct: 262 -----------------KTPIVATSKKTKCKSDLSVKVWKWSF 287
>AT1G17620.1 | chr1:6062313-6063107 FORWARD LENGTH=265
Length = 264
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 74 GWCCACCLWMTLVVVGLVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDAVTSR 133
G CC CC W V++ L+ + A A+ V Y+ Y PQ P+F V+ L+++ LN + + +T+
Sbjct: 56 GCCCRCCCWTIFVIILLLLIVAAASAVVYLIYRPQRPSFTVSELKISTLNFTSAVRLTTA 115
Query: 134 IEFTVTARNPNDK------XXXXXXXXXXXXXXXXXXXXXXTVPGFVHPAGNTTVIKGDA 187
I +V ARNPN T+ F H NTT ++
Sbjct: 116 ISLSVIARNPNKNVGFIYDVTDITLYKASTGGDDDVVIGKGTIAAFSHGKKNTTTLRSTI 175
Query: 188 SAAAATVDPLVA----NGLRSRKSHAMSVEMDSKVGFQIGRFKSKRINVRVLCAGF 239
+ +D + A L+++K+ A+ + ++SKV ++G K+ + +RV C G
Sbjct: 176 GSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSKVKVKMGALKTPKSGIRVTCEGI 231
>AT1G65690.1 | chr1:24431642-24432898 REVERSE LENGTH=253
Length = 252
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 20/177 (11%)
Query: 79 CCLWMTLVVVGLVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDAVTSRIEFTV 138
C L + +V VG + G+ Y+ + P+LP +++ L+L ++ ++T+ T+
Sbjct: 71 CFLLLLVVAVG------ASIGILYLVFKPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTI 124
Query: 139 TARNPNDKXXXXXXXXXXXXX-XXXXXXXXXTVPGFVHPAGNTTVIKGDASAAAATVDPL 197
TA+NPN+K ++P F NTTVI + +
Sbjct: 125 TAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQN---- 180
Query: 198 VANGLRSRKSHA--------MSVEMDSKVGFQIGRFKSKRINVRVLCAGFTAALAKN 246
A+GLR+ + + ++ V + G+ K + V C F +LA N
Sbjct: 181 -ASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVDSLATN 236
>AT2G27080.1 | chr2:11566383-11567165 FORWARD LENGTH=261
Length = 260
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 14/154 (9%)
Query: 77 CACCLWMTLVVVG-LVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDAVTSRIE 135
C CC L V L+ L I+ V Y+ Y P+ P +++ ++ +N++ + ++
Sbjct: 71 CRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTSPISPSFN 130
Query: 136 FTVTARNPNDKXXXXXXXXXXXXXXXXXXXXXXTV-PGFVHPAGNTTVIKGDASAAAATV 194
TV +RN N K V P F PA N TV+K
Sbjct: 131 VTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVK---------- 180
Query: 195 DPLVANGLRSRKSHAMSVEMDSKVGFQIGRFKSK 228
LV +G + + + M EM ++V + FK K
Sbjct: 181 --LVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLK 212
>AT5G22870.1 | chr5:7647056-7647679 REVERSE LENGTH=208
Length = 207
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 72/167 (43%), Gaps = 3/167 (1%)
Query: 82 WMTLVVVGLVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDAVTSRIEFTVTAR 141
++ LV++ L+F+ A+ + ++ P+ + V + + N+++ + +++ +FT+ +
Sbjct: 28 YIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATFQFTIQSH 87
Query: 142 NPNDKXXXXXXXXXXXXXXXXXXXXXXTVPGFVHPAGNTTVIKGDASAAAATVDPLVANG 201
NPN + TV F P N I A V
Sbjct: 88 NPNHRISVYYSSVEIFVKFKDQTLAFDTVEPFHQPRMNVKQIDETLIAENVAVSKSNGKD 147
Query: 202 LRSRKSH---AMSVEMDSKVGFQIGRFKSKRINVRVLCAGFTAALAK 245
LRS+ S V + ++V F++G +KS ++ C+ T +L++
Sbjct: 148 LRSQNSLGKIGFEVFVKARVRFKVGIWKSSHRTAKIKCSHVTVSLSQ 194
>AT5G36970.1 | chr5:14604367-14605194 REVERSE LENGTH=249
Length = 248
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 5/177 (2%)
Query: 75 WCCACCLWMTLVVVGLVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDAVTSRI 134
WC C + ++ + +V +GAI G+ Y+ + P+ P + + L+L ++ ++++
Sbjct: 58 WCRCVCYTLLVLFLLIVIVGAIV-GILYLVFRPKFPDYNIDRLQLTRFQLNQDLSLSTAF 116
Query: 135 EFTVTARNPNDKX-XXXXXXXXXXXXXXXXXXXXXTVPGFVHPAGNTTVIKGDASAAAAT 193
T+TA+NPN+K ++P F NTT+I + +
Sbjct: 117 NVTITAKNPNEKIGIYYEDGSKISVLYMQTRISNGSLPKFYQGHENTTIILVEMTGFTQN 176
Query: 194 VDPLVANGLRSRK---SHAMSVEMDSKVGFQIGRFKSKRINVRVLCAGFTAALAKNT 247
L+ ++ S + + + V ++G+ K ++ V C +LA N+
Sbjct: 177 ATSLMTTLQEQQRLTGSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCGVSVDSLAANS 233
>AT4G01110.1 | chr4:480176-481056 REVERSE LENGTH=262
Length = 261
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 21/166 (12%)
Query: 90 LVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNVSDSDA----------VTSRIEFTVT 139
++ L + VF++ Y P+LP ++S R++ N S A T+R++F
Sbjct: 75 VILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQLTAEATARLDF--- 131
Query: 140 ARNPNDKXXXXXXXXXXXXXXX----XXXXXXXTVPGFVHPAGNTTVIKGDASAAAATVD 195
RNPN K V GFV GN TV+ VD
Sbjct: 132 -RNPNGKLRYYYGNVDVAVSVGEDDFETSLGSTKVKGFVEKPGNRTVVIVPIKVKKQQVD 190
Query: 196 PLVANGLRS-RKSHAMSVEM--DSKVGFQIGRFKSKRINVRVLCAG 238
LR+ KS + V++ +KVG +GR K + V + C G
Sbjct: 191 DPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIVTVGVTISCGG 236
>AT1G54540.1 | chr1:20367702-20368421 REVERSE LENGTH=240
Length = 239
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 65 PAXXXXXXXGWCCACCLWMTLVVVGLVFLGAIAAGVFYVAYHPQLPTFAVTSLRLAALNV 124
P CC W+ ++V + AIA V Y +HP+LP++ V SLR+ L +
Sbjct: 39 PPVIPSKNRNMCCKIFCWVLSLLVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGI 98
Query: 125 SDSDAVTSRIEFTVTARNPNDK 146
+ ++++ + +TARNPN+K
Sbjct: 99 NLDLSLSAEFKVEITARNPNEK 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,303,635
Number of extensions: 85607
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 10
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)