Os01g0559100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0559100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.35 | 0.291 | 11.4 | -0.184 | 0.662 | -0.421 | 0.306 | 1.03 | -0.117 | 19.1 | 12.32 | 1257 | -- | -- |
| 40.01 | 0.295 | 11.4 | -0.313 | 0.658 | -0.412 | 0.416 | -- | -0.166 | 19.3 | 13.45 | 1242 | -- | -- |
| 38.55 | 0.289 | 11.4 | -0.177 | 0.672 | -0.424 | -- | 1.14 | -0.113 | 19.1 | 12.32 | 1239 | -- | -- |
| 40.6 | 0.297 | 11.4 | -0.339 | 0.661 | -0.384 | -- | -- | -0.181 | 19.1 | 14.21 | 1249 | -- | -- |
| 58.45 | 0.356 | 11.4 | -0.188 | -- | -0.363 | -- | 0.845 | -0.132 | -- | 10.5 | 1427 | -- | -- |
| 44.07 | 0.311 | 11.4 | -0.412 | 0.596 | -- | 0.456 | -- | -0.274 | 18.5 | -- | -- | -- | -- |
| 44.59 | 0.313 | 11.4 | -0.419 | 0.598 | -- | -- | -- | -0.272 | 18.5 | -- | -- | -- | -- |
| 59.7 | 0.36 | 11.4 | -0.308 | -- | -0.361 | -- | -- | -0.177 | -- | 10.31 | 1435 | -- | -- |
| 43.26 | 0.306 | 11.4 | -- | 0.662 | -0.437 | -- | -- | -0.106 | 19 | 10.47 | 1303 | -- | -- |
| 63.21 | 0.372 | 11.4 | -0.434 | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
| 49.21 | 0.328 | 11.4 | -- | 0.604 | -- | -- | -- | -0.226 | 18.5 | -- | -- | -- | -- |
| 62.42 | 0.368 | 11.4 | -- | -- | -0.401 | -- | -- | -0.176 | -- | 10.01 | 1440 | -- | -- |
| 68.17 | 0.385 | 11.4 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 31.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 32.34 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 6 | 32.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 17 | 32.44 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 18 | 32.44 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 29 | 32.91 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 30 | 32.93 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 74 | 34.83 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 82 | 35.30 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 97 | 35.51 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 113 | 35.69 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 119 | 35.82 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 123 | 35.87 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 124 | 35.89 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 126 | 35.89 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 128 | 35.89 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 180 | 35.89 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 184 | 35.89 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 246 | 36.28 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 247 | 36.31 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 252 | 36.44 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 257 | 36.48 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 260 | 36.52 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 262 | 36.56 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 275 | 36.71 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 287 | 36.96 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 303 | 37.03 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 307 | 37.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 333 | 37.35 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 349 | 37.41 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 365 | 37.54 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 384 | 37.60 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 397 | 37.63 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 399 | 37.65 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 445 | 37.78 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 449 | 37.79 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 466 | 37.83 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 474 | 37.88 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 493 | 37.92 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 495 | 37.92 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 497 | 37.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 503 | 37.96 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 547 | 38.09 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 556 | 38.12 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 559 | 38.13 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 565 | 38.15 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 567 | 38.16 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 576 | 38.18 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 578 | 38.18 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 592 | 38.19 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 603 | 38.19 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 615 | 38.21 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 624 | 38.23 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 628 | 38.24 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 638 | 38.25 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 658 | 38.28 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 660 | 38.28 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 664 | 38.29 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 667 | 38.29 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 676 | 38.30 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 700 | 38.31 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 719 | 38.32 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 746 | 38.34 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 783 | 38.37 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 825 | 38.44 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 880 | 38.50 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 928 | 38.54 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 946 | 38.57 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 974 | 38.59 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 1 |