BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0559100 Os01g0559100|AK105730
         (425 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27470.1  | chr5:9695087-9697154 FORWARD LENGTH=452            639   0.0  
AT1G11870.2  | chr1:4003895-4006556 FORWARD LENGTH=515            255   3e-68

>AT5G27470.1 | chr5:9695087-9697154 FORWARD LENGTH=452
          Length = 451

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 294/436 (67%), Positives = 360/436 (82%), Gaps = 23/436 (5%)

Query: 1   MLDINLFRTEKGGDPELIRRSQRNRSASVELVDEVIALDDQWRQRQFELDKIRQELNKTS 60
           MLDINLFR EKG +PE+IR SQR R ASVE+VDE+I LD +WRQRQFE+D  R+E NK +
Sbjct: 1   MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60

Query: 61  KEIGKLKAKKEDASALIQST--------------------LDAKLVTIGNIVHESVPVSD 100
           K++ +LK KKEDAS +IQ T                    L AKL  +GN+VH+SVPV  
Sbjct: 61  KQVAQLKIKKEDASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDK 120

Query: 101 DEANNLIVRTWGERRLEG---NLKNHVDLCKMLDIVALEKGADVAGGRGYYLKDEGVLLN 157
           DEANNL+++ WGE+R       LKNHVDL ++L I   ++GA++AG RG++LK +G++LN
Sbjct: 121 DEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLN 180

Query: 158 LALINFGLAFLRKRGFKPMQTPFFMRKETMGKCAQLAQFDEELYKLTGDGEEKYLIATSE 217
            ALINFGL FL+KRGF  +Q PFFMRK+ M KCAQLAQFDEELYK+TG+G++KYLIAT+E
Sbjct: 181 QALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 240

Query: 218 QPLCAYHLGDRIYPAELPIRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPN 277
           QPLCAYH+ + I+P ELP+RYAGYS+CFRKEAGSHGRDT GIFRVHQFEKIEQFC+T PN
Sbjct: 241 QPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKIEQFCITGPN 300

Query: 278 DNESWEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALNDAAAKKYDLEAWFPASKTYRELV 337
           +N SWEM +EM+KNSEDFY+ + LPYQ+VSIVSGALNDAAAKKYDLEAWFP+S+T+RELV
Sbjct: 301 ENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELV 360

Query: 338 SCSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTATERTLCCILENFQKENGVEVP 397
           SCSNCTD+QARRL I YGQKK++EQ+KQ+VHMLNSTLTATERT+CCILEN+Q+E+GV++P
Sbjct: 361 SCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCILENYQREDGVDIP 420

Query: 398 KALQPYMGGIDFLPFK 413
           + LQP+MGG  FLPFK
Sbjct: 421 EVLQPFMGGETFLPFK 436



>AT1G11870.2 | chr1:4003895-4006556 FORWARD LENGTH=515
          Length = 514

 Score =  255 bits (652), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/426 (34%), Positives = 248/426 (58%), Gaps = 36/426 (8%)

Query: 16  ELIRRSQRNRSASVELVDEVIALDDQWRQRQFELDKIRQELNKTSKEI-GKLKAKK---- 70
           E +  + RNR+++  L + V+ L +     Q E++++R+E N  +K++ GKL+  +    
Sbjct: 89  EAVEINIRNRNSNANL-EAVLQLYENMVNLQKEVERLREERNNVAKKMKGKLEPSERERL 147

Query: 71  -EDASALIQS--TLDAKLV-----------TIGNIVHESVPVSDDEANNLIVRTWGERRL 116
            E+   L +S  TL+  LV           +I N+ H  VPV  ++++ +       R  
Sbjct: 148 VEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPVGGEDSSAIRQEVGSPREF 207

Query: 117 EGNLKNHVDLCKMLDIVALEKGADVAGGRGYYLKDEGVLLNLALINFGLAFLRKRGFKPM 176
              +K+H+ L K LD++  +  A+V+G + +YLK+E VLL +AL+N+ L+ + K+G+ P+
Sbjct: 208 SFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVMKKGYTPL 267

Query: 177 QTPFFMRKETMGKCAQLAQFDE-ELYKLTGDGEEKYLIATSEQPLCAYHLGDRIYPAELP 235
            TP  +R   + KC    + D  ++Y +  DG ++ LI T+E P+   H+   +  + LP
Sbjct: 268 TTPEIVRSSIVEKCGFQPRGDNTQVYSI--DGTDQCLIGTAEIPVGGIHMDSILLESALP 325

Query: 236 IRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDF 295
           ++Y  +S CFR EAG+ G  T G++RVHQF K E F +  P D+ES+  H+E+I+  ED 
Sbjct: 326 LKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQPEDSESF--HQELIQIEEDL 383

Query: 296 YKEIGLPYQLVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGY- 354
           +  +GL ++ + + +  L   A +K+D+EAW P    + E+ S SNCTD+Q+RRLGI Y 
Sbjct: 384 FTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDYQSRRLGIRYR 443

Query: 355 -------GQKKNDEQ--SKQFVHMLNSTLTATERTLCCILENFQKENG-VEVPKALQPYM 404
                  G KK      + +FVH LN+T  A  R + C+LEN+Q+E+G V +P+ L+P+M
Sbjct: 444 PSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIPEPLRPFM 503

Query: 405 GGIDFL 410
           GGI+ +
Sbjct: 504 GGIELI 509



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,426,676
Number of extensions: 413852
Number of successful extensions: 1258
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1252
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)