Os01g0550100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-specific protease 6.
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Os01g0550100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-specific protease 6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.05 | 0.17 | 13.4 | 0.142 | 0.141 | 0.196 | -0.179 | -0.672 | 0.381 | 21.1 | 3 | 7 | -- | -- |
| 15.2 | 0.182 | 13.4 | 0.0752 | 0.121 | 0.0643 | -0.191 | -- | 0.324 | 20.7 | 28.44 | 15 | -- | -- |
| 15.16 | 0.181 | 13.4 | 0.0758 | 0.125 | 0.0614 | -- | -0.208 | 0.321 | 20.2 | 26.79 | 24 | -- | -- |
| 14.49 | 0.177 | 13.4 | 0.109 | 0.138 | 0.114 | -- | -- | 0.348 | 21.6 | 27.13 | 1514 | -- | -- |
| 15.98 | 0.186 | 13.4 | 0.0746 | -- | 0.0991 | -- | -0.225 | 0.326 | -- | 29.26 | 106 | -- | -- |
| 15.37 | 0.184 | 13.4 | 0.0765 | 0.138 | -- | -0.182 | -- | 0.321 | 21 | -- | -- | -- | -- |
| 15.49 | 0.184 | 13.4 | 0.0829 | 0.139 | -- | -- | -- | 0.321 | 20.9 | -- | -- | -- | -- |
| 15.44 | 0.183 | 13.4 | 0.0861 | -- | 0.133 | -- | -- | 0.357 | -- | 29.99 | 1566 | -- | -- |
| 14.65 | 0.178 | 13.4 | -- | 0.118 | 0.12 | -- | -- | 0.334 | 21 | 29.68 | 1588 | -- | -- |
| 16.59 | 0.19 | 13.4 | 0.083 | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
| 15.67 | 0.185 | 13.4 | -- | 0.139 | -- | -- | -- | 0.312 | 21 | -- | -- | -- | -- |
| 15.58 | 0.184 | 13.4 | -- | -- | 0.151 | -- | -- | 0.323 | -- | 30 | 1641 | -- | -- |
| 16.77 | 0.191 | 13.4 | -- | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.20 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 12.42 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 12.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 11 | 12.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 15 | 12.70 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 16 | 12.71 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 40 | 12.80 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 68 | 12.91 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 71 | 12.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 74 | 12.92 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 75 | 12.93 | radiation | 20 | 1440 | < th | dose independent | sin | 20 | NA |
| 87 | 12.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 128 | 12.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 169 | 13.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 194 | 13.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 222 | 13.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 230 | 13.04 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 237 | 13.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 15 |
| 239 | 13.04 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 248 | 13.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 259 | 13.05 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 280 | 13.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 346 | 13.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 352 | 13.06 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 423 | 13.07 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 517 | 13.11 | radiation | 20 | 1440 | < th | dose dependent | sin | 21 | NA |
| 607 | 13.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 617 | 13.14 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 727 | 13.18 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 801 | 13.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 858 | 13.22 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 920 | 13.23 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 936 | 13.24 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 971 | 13.25 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 974 | 13.25 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 5 |