BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0550100 Os01g0550100|AK066233
(474 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51710.1 | chr1:19175805-19179894 REVERSE LENGTH=483 644 0.0
AT3G21280.1 | chr3:7478166-7482037 REVERSE LENGTH=533 640 0.0
AT4G17895.1 | chr4:9939914-9942698 FORWARD LENGTH=696 59 5e-09
AT4G10590.2 | chr4:6538919-6543272 REVERSE LENGTH=911 59 5e-09
AT4G10570.1 | chr4:6523657-6528058 REVERSE LENGTH=924 59 5e-09
AT1G32850.1 | chr1:11902629-11906900 FORWARD LENGTH=893 55 1e-07
AT4G39910.1 | chr4:18511858-18514139 REVERSE LENGTH=372 51 2e-06
AT5G22030.2 | chr5:7290155-7296344 REVERSE LENGTH=914 50 2e-06
>AT1G51710.1 | chr1:19175805-19179894 REVERSE LENGTH=483
Length = 482
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/480 (66%), Positives = 369/480 (76%), Gaps = 6/480 (1%)
Query: 1 MPTVSVKWQKETFPGIEIDTSQPPVVFKTQLYTLTGVPPERQKIMVKGGILKDDADWSTL 60
MPTVSVKWQK+ GIEID S PP VFK QLY LTGVPPERQKIMVKGG+LKDD DW+ +
Sbjct: 1 MPTVSVKWQKKVLDGIEIDVSLPPYVFKAQLYDLTGVPPERQKIMVKGGLLKDDGDWAAI 60
Query: 61 GVKDGQKLMMIGTADEIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQ 120
GVKDGQKLMM+GTADEIVKAPEK VF EDLPEE LG+SAGL NLGNTCYMNST+Q
Sbjct: 61 GVKDGQKLMMMGTADEIVKAPEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYMNSTVQ 120
Query: 121 CLHSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRK 180
CL SVPELKSAL +YS R N VDQ SH LTVATR FGELD+SV V+P F LRK
Sbjct: 121 CLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGELDRSVNAVSPSQFWMVLRK 180
Query: 181 KYPQFAQQQNNVYMQQDAEECWTQLVYXXXXXXXXXXXXPPAGQMKELFGIDLVSRVHCA 240
KYPQF+Q QN ++MQQDAEECWTQL+Y A +K LFG++L SR+HC
Sbjct: 181 KYPQFSQLQNGMHMQQDAEECWTQLLYTLSQSLKAPTSSEGADAVKALFGVNLQSRLHCQ 240
Query: 241 ESGEESLERESVYSLKCHISHDVNHLHEGLKHGLKSELEKASPSLGRTALYTRESRINEL 300
ESGEES E ESVYSLKCHISH+VNHLHEGLKHGLK ELEK SP+LGRTALY +ES I+ L
Sbjct: 241 ESGEESSETESVYSLKCHISHEVNHLHEGLKHGLKGELEKTSPALGRTALYVKESLIDSL 300
Query: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELKQKLQAPRQMLRDAENA 360
PRYLTVQFVRFFWKRESNQKAKILRKVDYPL LD++D CS++L++KL+APRQ LR+ E
Sbjct: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEAPRQKLREEEGK 360
Query: 361 KFGLK------AQXXXXXXXXXXXXXXXXXXXXXMDIDKADSSVPKKHLTGIYDLIAVLT 414
K GL+ ++ ++ + SS + H+TGIYDL+AVLT
Sbjct: 361 KLGLQTSAKSGSKDSDVKMTDAEASANGSGESSTVNPQEGTSSEKETHMTGIYDLVAVLT 420
Query: 415 HKGRSADSGHYVGWVKQDDGKWIEFDDDNPSIRKEEEILKLSGGGDWHMAYICLYKARVI 474
HKGRSADSGHYV WVKQ+ GKWI++DDDNPS+++EE+I KLSGGGDWHMAYI +YKAR +
Sbjct: 421 HKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQREEDITKLSGGGDWHMAYITMYKARFV 480
>AT3G21280.1 | chr3:7478166-7482037 REVERSE LENGTH=533
Length = 532
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/478 (66%), Positives = 371/478 (77%), Gaps = 7/478 (1%)
Query: 1 MPTVSVKWQKETFPGIEIDTSQPPVVFKTQLYTLTGVPPERQKIMVKGGILKDDADWSTL 60
M TVSVKWQK+ F IEIDTSQPP VFK QLY L+GVPPERQKIMVKGG+LKDDADWSTL
Sbjct: 56 MLTVSVKWQKKVFESIEIDTSQPPFVFKAQLYDLSGVPPERQKIMVKGGLLKDDADWSTL 115
Query: 61 GVKDGQKLMMIGTADEIVKAPEKGPVFVEDLPEEEQVVALGHSAGLYNLGNTCYMNSTLQ 120
G+K+GQKLMM+GTADEIVKAPEKGPVF+EDLPEE+Q LG+SAGL NLGNTCYMNST+Q
Sbjct: 116 GLKNGQKLMMMGTADEIVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQ 175
Query: 121 CLHSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTFGELDQSVRPVAPLLFLQTLRK 180
CL SVPELKS L +Y + R VDQ SH LTVATR F ELD+SV+ VAP+ F L+K
Sbjct: 176 CLISVPELKSELSNYQ-SARTKDVDQTSHMLTVATRELFSELDKSVKAVAPMPFWMVLQK 234
Query: 181 KYPQFAQQQNNVYMQQDAEECWTQLVYXXXXXXXXXXXXPPAGQMKELFGIDLVSRVHCA 240
KYPQFAQ N +MQQDAEECWTQ++Y +K LFG++L++R+HC
Sbjct: 235 KYPQFAQLHNGNHMQQDAEECWTQMLYTLSQSLKLPSPSEDPDAVKALFGLNLLNRLHCQ 294
Query: 241 ESGEESLERESVYSLKCHISHDVNHLHEGLKHGLKSELEKASPSLGRTALYTRESRINEL 300
ES EES E ESV+SLKCHISH+VNHLHEGLKHGLK ELEK SPSLGRTA+Y +ES I+ L
Sbjct: 295 ESSEESSETESVFSLKCHISHEVNHLHEGLKHGLKGELEKTSPSLGRTAVYVKESLIDSL 354
Query: 301 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELKQKLQAPRQMLRDAENA 360
PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELD+YD CS++L++KL+APRQ LRD E
Sbjct: 355 PRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQ 414
Query: 361 KFGLKAQXXXXXX----XXXXXXXXXXXXXXXMDIDKADSSVPKKHLTGIYDLIAVLTHK 416
K GL+A D+ + + P H+TGIYDL++VLTHK
Sbjct: 415 KLGLQASAKSSSKGDDVKMTDAEGSSNQSGESSTGDQQEGASP--HMTGIYDLVSVLTHK 472
Query: 417 GRSADSGHYVGWVKQDDGKWIEFDDDNPSIRKEEEILKLSGGGDWHMAYICLYKARVI 474
GRSADSGHYV WVKQ+ GKW+++DD N S+++ E+I+KLSGGGDWHMAYI +YKAR+I
Sbjct: 473 GRSADSGHYVAWVKQESGKWVQYDDANTSLQRGEDIIKLSGGGDWHMAYIVMYKARLI 530
>AT4G17895.1 | chr4:9939914-9942698 FORWARD LENGTH=696
Length = 695
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 101/249 (40%), Gaps = 19/249 (7%)
Query: 93 EEEQVVALGHSAGLYNLGNTCYMNSTLQCL-HSVPELKSALLSYSDNVRGNGVDQASHNL 151
E E V +G AGL+NLGN+C++NS QC H+VP ++S LLS+ V + ++ +
Sbjct: 167 EPEPVTGVG--AGLWNLGNSCFLNSVFQCFTHTVPLIES-LLSFRYEVPCHCGNEFFCVI 223
Query: 152 TVATRNTFGELDQSVRPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLVYXXXX 211
+ L P+AP F L P F + Y Q+DA E +
Sbjct: 224 RAIRYHIEAALRPERCPIAPYFFFDNLNYFSPDFQR-----YQQEDAHEFLQAFLEKLEI 278
Query: 212 XXXXXXXXPPAGQMKELFGIDLVSRVHCAESGEESLERESVYSLKCHISHDVNHLHEGLK 271
+++F L+S + C S E L I DV+ L L+
Sbjct: 279 CGSDRTSFRGDITSQDVFSGRLISGLRCCNCDYVSETYEKSVGLSLEI-EDVDTLGSALE 337
Query: 272 HGLKSELEKASPSLGRTALYTRESR-----INELPRYLTVQFVRFFWKRESNQKAKILRK 326
+ +EK L + S+ +++LP T RF K KI +
Sbjct: 338 SFTR--VEKLDEQLTCDNCNEKVSKEKQLLLDKLPLVATFHLKRF--KNNGLYMEKIYKH 393
Query: 327 VDYPLELDV 335
V PLE+D+
Sbjct: 394 VKIPLEIDL 402
>AT4G10590.2 | chr4:6538919-6543272 REVERSE LENGTH=911
Length = 910
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 101 GHSAGLYNLGNTCYMNSTLQCL-HSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTF 159
G AGL NLGNTC+MNS LQCL H+ P ++ L YSD++ + L +A +
Sbjct: 300 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLL 359
Query: 160 GELDQSVR-PVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLV 206
+L S R VAP F L + PQF+ Y Q D++E L+
Sbjct: 360 KKLWSSGRNSVAPRAFKTKLARFAPQFSG-----YNQHDSQELLAFLL 402
>AT4G10570.1 | chr4:6523657-6528058 REVERSE LENGTH=924
Length = 923
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 101 GHSAGLYNLGNTCYMNSTLQCL-HSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTF 159
G AGL NLGNTC+MNS LQCL H+ P ++ L YSD++ + L +A +
Sbjct: 301 GGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLL 360
Query: 160 GELDQSVR-PVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLV 206
+L S R VAP F L + PQF+ Y Q D++E L+
Sbjct: 361 KKLWSSGRNAVAPRAFKTKLARFAPQFSG-----YNQHDSQELLAFLL 403
>AT1G32850.1 | chr1:11902629-11906900 FORWARD LENGTH=893
Length = 892
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 104 AGLYNLGNTCYMNSTLQCL-HSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTFGEL 162
GL NLGNTC+MNSTLQCL H+ P ++ L Y ++ L +A FGEL
Sbjct: 301 GGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIA----FGEL 356
Query: 163 DQSV-----RPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLV 206
+ + VAP F L + PQF+ Y Q D++E L+
Sbjct: 357 LRKLWSSGQNTVAPRAFKTKLARFAPQFSG-----YNQHDSQEMLAFLL 400
>AT4G39910.1 | chr4:18511858-18514139 REVERSE LENGTH=372
Length = 371
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 105 GLYNLGNTCYMNSTLQCLHSVPELKSALLSYSDNVRGNGVDQASHNLTVATRNTFGELDQ 164
G N GNTCY NS LQ L+ + LL Y + V A NL + F ++
Sbjct: 24 GFENFGNTCYCNSVLQALYFCVPFREQLLEYYTS--NKSVADAEENLMTCLADLFSQISS 81
Query: 165 SVRP---VAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEECWTQLV 206
+ +AP F+Q L+K+ F YM QDA E L+
Sbjct: 82 QKKKTGVIAPKRFVQRLKKQNELFRS-----YMHQDAHEFLNYLL 121
>AT5G22030.2 | chr5:7290155-7296344 REVERSE LENGTH=914
Length = 913
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 104 AGLYNLGNTCYMNSTLQCLHSVPELKSALLS-YSDNVRGNGVDQASHNLTVATRNTFGEL 162
GL NLGNTC+MNS+LQCL P+L L YS + + + +A FG+L
Sbjct: 321 TGLQNLGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALA----FGDL 376
Query: 163 DQSV-----RPVAPLLFLQTLRKKYPQFAQQQNNVYMQQDAEE 200
+S+ VAP F L + PQF+ + Q D++E
Sbjct: 377 LRSLWAPGASTVAPRTFKAKLARFAPQFSG-----FNQHDSQE 414
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,188,672
Number of extensions: 429981
Number of successful extensions: 1115
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1115
Number of HSP's successfully gapped: 8
Length of query: 474
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 372
Effective length of database: 8,310,137
Effective search space: 3091370964
Effective search space used: 3091370964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)