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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0549300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0229) R2 : 0.00182
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0439 (0.0481) R2dN8 : 0.00235 R2N8 : 0.00182
σ : 0.43
deviance : 85.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.55 0.416 3.36 0.147 0.225 -0.258 -0.255 -1.15 0.0315 6.69 70 4447 -- --
80.29 0.417 3.36 0.142 0.226 -0.337 -0.274 -- 0.0163 6.6 71 4419 -- --
78.7 0.413 3.36 0.145 0.225 -0.255 -- -1.16 0.0317 6.97 70 4450 -- --
80.35 0.417 3.36 0.0734 0.225 -0.349 -- -- 0.000124 7.02 70 4374 -- --
81.33 0.42 3.36 0.15 -- -0.252 -- -1.16 0.0402 -- 70.07 4425 -- --
82.04 0.425 3.35 0.0809 0.225 -- -0.265 -- 0.0477 6.65 -- -- -- --
82.2 0.425 3.35 0.0775 0.224 -- -- -- 0.0488 6.97 -- -- -- --
82.88 0.424 3.37 0.0745 -- -0.355 -- -- 0.0023 -- 71 4331 -- --
80.49 0.418 3.36 -- 0.222 -0.348 -- -- -0.00563 6.91 70 4371 -- --
84.83 0.43 3.36 0.0821 -- -- -- -- 0.053 -- -- -- -- --
82.36 0.425 3.35 -- 0.225 -- -- -- 0.0402 6.95 -- -- -- --
83.04 0.424 3.37 -- -- -0.352 -- -- -0.00335 -- 70.91 4330 -- --
85.01 0.43 3.36 -- -- -- -- -- 0.0439 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.64 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 73.67 radiation 1.0 43200 < th dose dependent rect. 3 1
3 73.84 atmosphere 1000.0 30 > th dose independent rect. 3 23
12 74.30 temperature 20.0 30 > th dose dependent rect. 2 1
14 74.31 atmosphere 1005.0 30 > th dose independent rect. 2 1
23 74.33 wind 9.0 1440 < th dose independent rect. 3 1
24 74.33 temperature 10.0 1440 > th dose independent rect. 3 1
27 74.33 temperature 30.0 1440 < th dose independent rect. 3 1
31 74.33 humidity 50.0 1440 > th dose independent rect. 3 1
41 74.33 atmosphere 995.0 1440 > th dose independent rect. 3 1
42 74.33 radiation 1.0 1440 < th dose independent rect. 3 1
62 74.33 temperature 10.0 1440 > th dose independent rect. 4 23
72 74.35 wind 3.0 30 < th dose independent rect. 2 1
73 74.35 temperature 20.0 30 > th dose independent rect. 2 1
75 74.37 wind 5.0 30 < th dose dependent rect. 2 1
81 74.40 humidity 90.0 30 > th dose independent rect. 2 1
82 74.40 humidity 50.0 30 > th dose dependent rect. 2 1
86 74.41 temperature 10.0 30 > th dose independent rect. 2 1
88 74.41 temperature 30.0 30 < th dose independent rect. 2 1
89 74.41 humidity 50.0 30 > th dose independent rect. 2 1
93 74.41 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 74.41 radiation 1.0 30 < th dose independent rect. 2 1
100 74.41 precipitation 0.1 30 < th dose independent rect. 2 1
101 74.41 temperature 10.0 30 > th dose independent rect. 3 23
103 74.41 radiation 1.0 30 < th dose dependent rect. 2 1
108 74.41 precipitation 0.1 30 < th dose dependent rect. 2 1
115 74.57 atmosphere 1015.0 30 < th dose dependent rect. 2 1
117 74.61 temperature 30.0 30 < th dose dependent rect. 2 1
119 74.63 wind 1.0 30 > th dose independent rect. 2 1
126 74.78 temperature 25.0 90 > th dose dependent rect. 1 3
167 75.06 precipitation 0.1 30 < th dose independent rect. 3 23
174 75.06 precipitation 0.1 30 < th dose dependent rect. 3 23
179 75.29 wind 9.0 30 < th dose independent rect. 3 23
204 76.35 humidity 50.0 30 > th dose independent rect. 3 23
241 77.04 humidity 90.0 90 < th dose independent rect. 2 1
245 77.08 humidity 80.0 14400 < th dose dependent rect. 4 5
260 77.47 wind 1.0 14400 < th dose dependent rect. 6 1
261 77.49 humidity 70.0 14400 > th dose independent rect. 8 1
268 77.70 humidity 70.0 14400 > th dose independent rect. 4 5
269 77.70 humidity 70.0 14400 > th dose independent rect. 24 9
270 77.70 humidity 70.0 14400 > th dose independent rect. 22 11
277 77.72 humidity 70.0 14400 > th dose independent rect. 6 3
285 77.75 humidity 70.0 14400 < th dose independent rect. 8 1
288 77.80 precipitation 0.1 720 < th dose independent rect. 15 8
289 77.80 precipitation 0.1 720 < th dose dependent rect. 15 8
290 77.81 atmosphere 995.0 720 > th dose independent rect. 23 16
292 77.83 humidity 90.0 90 < th dose independent rect. 2 3
293 77.84 humidity 70.0 14400 < th dose independent rect. 21 13
297 77.85 humidity 70.0 14400 < th dose independent rect. 6 4
352 78.05 temperature 30.0 30 < th dose independent rect. 3 23
356 78.06 temperature 25.0 720 > th dose dependent rect. 3 5
362 78.10 wind 1.0 14400 < th dose dependent rect. 4 3
365 78.11 wind 3.0 30 < th dose dependent rect. 2 3
367 78.12 precipitation 0.1 720 < th dose independent rect. 11 16
368 78.12 precipitation 0.1 720 < th dose dependent rect. 11 16
373 78.15 wind 1.0 14400 < th dose independent rect. 6 1
378 78.19 wind 1.0 14400 < th dose independent rect. 4 3
383 78.20 wind 1.0 14400 > th dose independent rect. 4 3
390 78.22 humidity 90.0 4320 < th dose dependent rect. 3 12
391 78.23 humidity 70.0 4320 > th dose independent rect. 10 1
393 78.23 humidity 50.0 4320 > th dose dependent rect. 11 2
397 78.24 humidity 90.0 4320 < th dose dependent rect. 11 2
398 78.24 humidity 50.0 4320 > th dose dependent rect. 3 11
404 78.25 humidity 70.0 4320 > th dose independent rect. 8 7
405 78.25 temperature 10.0 720 > th dose independent rect. 15 8
407 78.25 humidity 70.0 4320 > th dose independent rect. 4 11
412 78.25 temperature 10.0 720 > th dose independent rect. 23 16
421 78.25 humidity 90.0 4320 < th dose dependent rect. 23 16
430 78.27 humidity 70.0 4320 > th dose independent sin 5 NA
434 78.27 temperature 10.0 720 > th dose independent rect. 3 8
435 78.27 atmosphere 995.0 720 > th dose independent rect. 3 8
443 78.27 temperature 10.0 720 > th dose independent rect. 11 16
491 78.31 humidity 70.0 4320 < th dose independent rect. 8 7
538 78.34 humidity 70.0 4320 < th dose independent rect. 10 1
542 78.34 humidity 90.0 4320 < th dose dependent sin 4 NA
556 78.35 humidity 60.0 10 > th dose independent rect. 14 12
566 78.36 humidity 70.0 4320 < th dose independent sin 5 NA
572 78.36 wind 9.0 720 < th dose independent rect. 3 8
679 78.39 humidity 50.0 4320 > th dose dependent sin 4 NA
680 78.39 humidity 60.0 14400 < th dose dependent rect. 12 1
708 78.41 atmosphere 1000.0 10 > th dose independent rect. 14 12
803 78.45 humidity 50.0 720 > th dose independent rect. 3 8
846 78.47 humidity 50.0 14400 > th dose dependent rect. 8 1
949 78.51 humidity 80.0 4320 > th dose dependent rect. 7 2