BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0549300 Os01g0549300|AK107646
(389 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303 67 2e-11
AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591 56 3e-08
AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592 50 2e-06
>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
Length = 302
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 92 VRTEKRILWTEEEDIILMSAWIEHSTDSTCGADKGGGQYWGEVVESYNKTTPPL---RKR 148
V+ E+R W+ ED++L+SAW+ S D+ G ++ G +W + +Y +P L KR
Sbjct: 43 VKRERR-KWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIA-AYYGASPKLNGVEKR 100
Query: 149 NLKQCKDRWHKINRWTDLFECAYVKARRIFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFV 208
K RW KIN F +Y A + +SG ++ + AH+ Y ++ G F
Sbjct: 101 ETGHIKQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSEH-----GKFT 155
Query: 209 LMEVWKICREVSKW 222
L W++ R KW
Sbjct: 156 LEHAWRVLRFEQKW 169
>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
Length = 590
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 93 RTEKRILWTEEEDIILMSAWIEHSTDSTCGADKGGGQYWGEVVESYNKTT--PPLRKRNL 150
R + R W+ ED IL+SAW+ S D + +W + +N + L KR
Sbjct: 266 RRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAYFNNSASLANLPKREP 325
Query: 151 KQCKDRWHKINRWTDLFECAYVKARRIFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFVLM 210
CK RW K+N F Y +A +SG S A++ Y ++ K F L
Sbjct: 326 SHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVYTNNYK----SNFTLE 381
Query: 211 EVWKICREVSKW 222
W+ R KW
Sbjct: 382 HAWRELRHSKKW 393
>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
Length = 591
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 93 RTEKRILWTEEEDIILMSAWIEHSTDSTCGA--DKGGGQYWGEVVE--SYNKTTPPLRKR 148
R +R W+ +D+IL+SAW+ S D ++ +W + S + + L KR
Sbjct: 266 RKARRRKWSPPDDVILISAWLNTSKDRKVVVYDEQQAHTFWKRIGAHVSNSASLANLPKR 325
Query: 149 NLKQCKDRWHKINRWTDLFECAYVKARRIFTSGYSNQMWIDAAHKFYVDDNKEAKLGPFV 208
C+ RW KIN + F Y +A SG S A++ Y ++ + F
Sbjct: 326 EWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSEDDVFQVAYQLYYNNY----MSNFK 381
Query: 209 LMEVWKICREVSKW 222
L W+ R KW
Sbjct: 382 LEHAWRELRHNKKW 395
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,884,321
Number of extensions: 380879
Number of successful extensions: 1158
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 3
Length of query: 389
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 289
Effective length of database: 8,364,969
Effective search space: 2417476041
Effective search space used: 2417476041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)