Os01g0546800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0546800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Virulence factor, pectin lyase fold family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.29 | 0.394 | 10.2 | 0.211 | 0.688 | -1.24 | -0.0912 | 0.606 | 0.0928 | 3.21 | 22.55 | 572 | -- | -- |
| 70.7 | 0.392 | 10.2 | 0.282 | 0.678 | -1.34 | -0.0868 | -- | 0.1 | 3.22 | 22.4 | 574 | -- | -- |
| 70.31 | 0.391 | 10.2 | 0.212 | 0.687 | -1.24 | -- | 0.606 | 0.0945 | 3.21 | 22.52 | 575 | -- | -- |
| 70.7 | 0.392 | 10.2 | 0.275 | 0.688 | -1.37 | -- | -- | 0.107 | 3.24 | 22.37 | 572 | -- | -- |
| 92.38 | 0.448 | 10.2 | 0.154 | -- | -1.26 | -- | 0.654 | 0.0268 | -- | 24.5 | 968 | -- | -- |
| 91.3 | 0.448 | 10.1 | 0.604 | 0.69 | -- | -0.112 | -- | 0.293 | 2.59 | -- | -- | -- | -- |
| 91.34 | 0.448 | 10.1 | 0.607 | 0.69 | -- | -- | -- | 0.294 | 2.58 | -- | -- | -- | -- |
| 92.85 | 0.449 | 10.2 | 0.249 | -- | -1.34 | -- | -- | 0.0492 | -- | 24.15 | 953 | -- | -- |
| 72.46 | 0.396 | 10.2 | -- | 0.695 | -1.57 | -- | -- | 0.0907 | 3.32 | 22.02 | 572 | -- | -- |
| 119.24 | 0.51 | 10.1 | 0.636 | -- | -- | -- | -- | 0.311 | -- | -- | -- | -- | -- |
| 101.06 | 0.47 | 10.1 | -- | 0.702 | -- | -- | -- | 0.226 | 2.59 | -- | -- | -- | -- |
| 94.17 | 0.452 | 10.2 | -- | -- | -1.57 | -- | -- | 0.0412 | -- | 22.84 | 963 | -- | -- |
| 129.92 | 0.532 | 10.1 | -- | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 9 | 71.28 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 19 |
| 19 | 71.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 52 | 71.95 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 87 | 72.18 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 88 | 72.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 96 | 72.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 104 | 72.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 116 | 72.33 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 125 | 72.36 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 130 | 72.40 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 21 |
| 135 | 72.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 145 | 72.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 155 | 72.49 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 172 | 72.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 186 | 72.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 202 | 72.66 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 223 | 72.71 | temperature | 20 | 1440 | < th | dose dependent | sin | 5 | NA |
| 229 | 72.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 232 | 72.74 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 238 | 72.76 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 7 |
| 254 | 72.78 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 260 | 72.79 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 262 | 72.79 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 274 | 72.83 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 283 | 72.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 288 | 72.86 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 319 | 72.93 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 320 | 72.93 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 329 | 72.96 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 340 | 72.99 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 354 | 73.02 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 356 | 73.03 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 410 | 73.14 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 415 | 73.15 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 419 | 73.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 461 | 73.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 483 | 73.27 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 576 | 73.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 598 | 73.47 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 830 | 73.80 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 852 | 73.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 863 | 73.85 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 899 | 73.89 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 931 | 73.93 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 932 | 73.93 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 965 | 73.97 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 978 | 73.99 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 984 | 74.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |