Os01g0546100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os01g0546100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.91 | 0.508 | 3.15 | 0.45 | 0.207 | -0.889 | -0.259 | 2.6 | 0.208 | 17.4 | 9.988 | 319 | -- | -- |
| 120.84 | 0.512 | 3.2 | 0.0766 | 0.2 | -0.829 | 0.165 | -- | 0.102 | 16.9 | 14.2 | 347 | -- | -- |
| 117.05 | 0.504 | 3.16 | 0.43 | 0.211 | -0.899 | -- | 2.45 | 0.203 | 17.3 | 11.46 | 319 | -- | -- |
| 120.9 | 0.512 | 3.21 | 0.0473 | 0.217 | -0.843 | -- | -- | 0.101 | 18 | 14.2 | 379 | -- | -- |
| 118.68 | 0.507 | 3.16 | 0.376 | -- | -0.688 | -- | 2.43 | 0.168 | -- | 10.14 | 319 | -- | -- |
| 128.39 | 0.531 | 3.23 | -0.138 | 0.027 | -- | -0.206 | -- | -0.0229 | 2.99 | -- | -- | -- | -- |
| 128.54 | 0.531 | 3.23 | -0.134 | 0.0261 | -- | -- | -- | -0.0217 | 2.85 | -- | -- | -- | -- |
| 121.42 | 0.513 | 3.2 | 0.0783 | -- | -0.656 | -- | -- | 0.0998 | -- | 11.98 | 1732 | -- | -- |
| 120.95 | 0.512 | 3.21 | -- | 0.21 | -0.813 | -- | -- | 0.0919 | 18 | 13.52 | 382 | -- | -- |
| 128.58 | 0.53 | 3.23 | -0.133 | -- | -- | -- | -- | -0.021 | -- | -- | -- | -- | -- |
| 129.01 | 0.531 | 3.22 | -- | 0.0235 | -- | -- | -- | -0.00677 | 2.8 | -- | -- | -- | -- |
| 121.56 | 0.513 | 3.2 | -- | -- | -0.622 | -- | -- | 0.086 | -- | 12.53 | 1724 | -- | -- |
| 129.04 | 0.53 | 3.22 | -- | -- | -- | -- | -- | -0.00628 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.35 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 2 | 108.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 5 | 108.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 30 | 110.03 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 70 | 110.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 77 | 110.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 80 | 110.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 21 |
| 89 | 111.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 105 | 111.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 114 | 111.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 152 | 111.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 172 | 111.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 207 | 111.65 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 226 | 111.69 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 319 | 111.97 | humidity | 90 | 14400 | > th | dose independent | sin | 17 | NA |
| 324 | 111.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 325 | 111.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 338 | 112.05 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 365 | 112.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 434 | 112.31 | humidity | 90 | 14400 | < th | dose independent | sin | 19 | NA |
| 450 | 112.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 519 | 112.51 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 632 | 112.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 647 | 112.74 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 670 | 112.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 16 |
| 692 | 112.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 708 | 112.81 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 899 | 113.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 919 | 113.13 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |