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Os01g0542000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribose/galactose isomerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0267) R2 : 0.907
β1 : 1.7 (0.0991) R2dD : 0.0655 R2D : 0.0121
β2 : 5.69 (0.0924) R2dC : 1.47 R2C : 0.611
β3 : -3.24 (0.127) R2dE : 0.261 R2E : -0.611
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.57 (0.0585) R2dN8 : 0.0267 R2N8 : -0.0238
σ : 0.497
deviance : 113.88
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C
peak time of C : 15.7
E
wheather : temperature
threshold : 0.4789
memory length : 325
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0167
open length of G : 20.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.7 0.505 9.75 1.8 5.69 -3.14 -0.724 0.439 0.559 15.7 7.851 288 0.699 19.6
115.1 0.5 9.75 1.73 5.7 -3.11 -0.737 -- 0.598 15.7 6.392 284 0.7 19.8
113.61 0.496 9.75 1.71 5.72 -3.27 -- -0.371 0.582 15.7 0.6144 324 0.0166 20.5
113.88 0.497 9.75 1.7 5.69 -3.24 -- -- 0.57 15.7 0.4789 325 0.0167 20.5
1075.83 1.53 9.75 1.72 -- -2.46 -- -1.36 0.252 -- 12.58 4140 0.234 21.5
244.81 0.734 9.83 1.25 4.2 -- -0.95 -- 0.215 16.4 -- -- -- --
247.28 0.736 9.84 1.24 4.2 -- -- -- 0.21 16.4 -- -- -- --
817.58 1.33 9.69 2.12 -- -2.87 -- -- 0.819 -- 18.34 3803 20 0.648
187.08 0.637 9.8 -- 5.44 -2.66 -- -- 0.406 15.7 -1.423 285 0.45 20.3
1194.44 1.61 9.81 1.07 -- -- -- -- 0.0992 -- -- -- -- --
287.69 0.793 9.87 -- 4.18 -- -- -- 0.0724 16.4 -- -- -- --
449.59 0.988 9.55 -- -- -3.53 -- -- 1.21 -- 10.57 696 21.1 1.72
1224.78 1.63 9.83 -- -- -- -- -- -0.0198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.35 temperature 10.0 270 > th dose dependent rect. 1 19
2 118.62 temperature 10.0 270 > th dose dependent rect. 1 5
4 121.43 precipitation 0.1 270 < th dose independent rect. 1 5
5 121.43 precipitation 0.1 270 < th dose dependent rect. 1 5
6 121.89 radiation 10.0 270 < th dose independent rect. 1 5
7 121.89 wind 9.0 270 < th dose dependent rect. 1 5
8 122.27 atmosphere 1010.0 270 < th dose independent rect. 1 5
10 123.03 wind 9.0 270 < th dose independent rect. 1 5
11 123.04 temperature 10.0 270 > th dose independent rect. 1 5
13 123.04 temperature 30.0 270 < th dose independent rect. 1 5
14 123.04 humidity 50.0 270 > th dose independent rect. 1 5
17 123.04 atmosphere 995.0 270 > th dose independent rect. 1 5
22 123.04 temperature 10.0 270 > th dose independent rect. 6 19
24 123.15 radiation 40.0 270 < th dose dependent rect. 1 5
29 124.33 humidity 50.0 270 > th dose dependent rect. 1 5
30 124.79 precipitation 0.1 270 < th dose independent rect. 6 19
31 124.79 precipitation 0.1 270 < th dose dependent rect. 6 19
32 124.90 precipitation 0.1 270 < th dose independent rect. 2 3
33 124.90 precipitation 0.1 270 < th dose dependent rect. 2 3
36 125.24 temperature 10.0 270 > th dose dependent rect. 2 3
37 125.30 wind 9.0 270 < th dose dependent rect. 2 3
38 125.75 temperature 10.0 90 > th dose dependent rect. 3 18
39 125.81 wind 9.0 270 < th dose independent rect. 6 19
43 126.55 radiation 1.0 270 < th dose independent rect. 2 3
45 126.56 wind 9.0 270 < th dose independent rect. 2 3
46 126.56 temperature 10.0 270 > th dose independent rect. 2 3
48 126.56 temperature 30.0 270 < th dose independent rect. 2 3
49 126.56 humidity 50.0 270 > th dose independent rect. 2 3
52 126.56 atmosphere 995.0 270 > th dose independent rect. 2 3
53 126.56 atmosphere 1010.0 270 < th dose independent rect. 2 3
58 126.56 temperature 10.0 270 > th dose independent rect. 5 21
59 126.57 radiation 30.0 270 < th dose dependent rect. 2 3
66 126.89 humidity 50.0 270 > th dose dependent rect. 2 3
68 127.31 atmosphere 995.0 270 > th dose independent rect. 6 19
82 129.93 wind 9.0 270 < th dose independent rect. 5 21
83 129.95 precipitation 0.1 270 < th dose independent rect. 5 21
84 129.95 precipitation 0.1 270 < th dose dependent rect. 5 21
85 130.03 radiation 30.0 90 < th dose dependent rect. 3 6
119 130.96 temperature 10.0 10 > th dose dependent rect. 3 19
136 132.27 atmosphere 1015.0 270 < th dose dependent rect. 2 3
137 132.28 wind 7.0 10 < th dose dependent rect. 3 6
141 132.39 humidity 50.0 90 > th dose dependent rect. 3 5
178 133.85 temperature 30.0 270 < th dose dependent rect. 6 19
181 133.90 atmosphere 1015.0 270 < th dose dependent rect. 1 5
207 134.46 atmosphere 995.0 270 > th dose independent rect. 5 21
318 136.43 humidity 50.0 10 > th dose dependent rect. 3 6
366 138.26 wind 1.0 270 > th dose independent rect. 6 19
405 138.89 temperature 15.0 270 > th dose independent rect. 1 18
487 140.87 precipitation 0.1 10 < th dose independent rect. 3 5
488 140.87 precipitation 0.1 10 < th dose dependent rect. 3 5
489 140.88 radiation 1.0 270 < th dose independent rect. 1 11
492 140.93 temperature 15.0 270 > th dose independent rect. 10 10
511 141.57 wind 9.0 270 < th dose independent rect. 1 18
522 141.78 atmosphere 1010.0 270 < th dose independent rect. 11 9
528 141.93 temperature 15.0 90 > th dose independent rect. 3 18
530 141.94 radiation 1.0 270 < th dose dependent rect. 1 11
539 142.17 radiation 1.0 270 < th dose dependent rect. 5 20
548 142.40 precipitation 0.1 270 < th dose independent rect. 1 18
549 142.40 precipitation 0.1 270 < th dose dependent rect. 1 18
553 142.46 atmosphere 1015.0 270 < th dose independent rect. 6 19
555 142.50 temperature 10.0 10 > th dose dependent rect. 3 5
562 142.67 temperature 10.0 270 > th dose independent rect. 19 6
563 142.67 temperature 30.0 270 < th dose independent rect. 19 6
564 142.67 humidity 50.0 270 > th dose independent rect. 19 6
565 142.67 atmosphere 995.0 270 > th dose independent rect. 19 6
566 142.67 radiation 1.0 270 < th dose independent rect. 19 6
572 142.67 atmosphere 1015.0 270 < th dose independent rect. 1 18
573 142.67 radiation 1.0 270 < th dose dependent rect. 19 6
582 142.72 wind 9.0 270 < th dose independent rect. 19 6
605 143.27 humidity 70.0 10 > th dose independent rect. 3 5
615 143.44 wind 7.0 10 < th dose independent rect. 3 5
619 143.53 temperature 10.0 10 > th dose independent rect. 3 5
621 143.53 temperature 30.0 10 < th dose independent rect. 3 5
622 143.53 humidity 50.0 10 > th dose independent rect. 3 5
624 143.53 atmosphere 995.0 10 > th dose independent rect. 3 5
625 143.53 atmosphere 1015.0 10 < th dose independent rect. 3 5
626 143.53 temperature 10.0 10 > th dose independent rect. 8 19
630 143.57 temperature 10.0 270 > th dose dependent rect. 10 10
633 143.60 precipitation 0.1 270 < th dose independent rect. 19 6
634 143.60 precipitation 0.1 270 < th dose dependent rect. 19 6
643 143.93 temperature 15.0 270 > th dose independent rect. 24 21
677 144.52 humidity 50.0 270 > th dose dependent rect. 19 6
718 144.91 precipitation 0.1 10 < th dose independent rect. 8 19
719 144.91 precipitation 0.1 10 < th dose dependent rect. 8 19
727 144.98 temperature 30.0 270 < th dose independent rect. 20 15
728 144.99 wind 9.0 90 < th dose independent rect. 3 18
843 145.90 atmosphere 1015.0 90 < th dose independent rect. 3 18
852 145.93 humidity 50.0 90 > th dose dependent rect. 21 6
881 146.13 wind 9.0 10 < th dose independent rect. 8 19
883 146.19 wind 9.0 270 < th dose independent rect. 11 9
890 146.38 precipitation 0.1 90 < th dose independent rect. 21 6
891 146.38 precipitation 0.1 90 < th dose dependent rect. 21 6
893 146.39 temperature 10.0 270 > th dose dependent rect. 10 21
904 146.61 atmosphere 995.0 10 > th dose independent rect. 8 19
912 146.70 radiation 1.0 270 < th dose independent rect. 6 19
946 147.06 temperature 10.0 270 > th dose independent rect. 20 15
947 147.06 atmosphere 995.0 270 > th dose independent rect. 20 15
969 147.35 temperature 30.0 270 < th dose independent rect. 6 19
997 147.55 humidity 50.0 270 > th dose independent rect. 6 19