BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0542000 Os01g0542000|Os01g0542000
         (315 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04880.1  | chr3:1346431-1347363 REVERSE LENGTH=311            316   1e-86

>AT3G04880.1 | chr3:1346431-1347363 REVERSE LENGTH=311
          Length = 310

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/314 (52%), Positives = 193/314 (61%), Gaps = 15/314 (4%)

Query: 2   AAAAADRRFKIFAAADAFGQPLKDAVVAHLRAHPSVADVVDLGVDKYYXXXXXXXRSVIA 61
           A +A D+  KI   AD FG  LKDA+V HLR+     DV D GV  YY       R V A
Sbjct: 4   AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLG--IDVEDTGVSSYYSAGSEVGRRVSA 61

Query: 62  TPTSSSDPALEXXXXXXXXXXXXXXIFANKYPGVYXXXXXXXXXXXXXRSINACNVLALS 121
           + +S      E              +FANK+PGVY             RSI+ CNVLA S
Sbjct: 62  SSSS------EVRGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFS 115

Query: 122 GXXXXXXXXXXXXXXXXXXPFRAPCPASGDAPWPDDIQRFFDSAPAEMAAIP-----DIS 176
           G                  PF++PCPASG  PW   I  F D++ +EM+ I      D +
Sbjct: 116 GIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDST 175

Query: 177 SASVPDS--ACAICCLRKGMEFEPVGIMPGGEMRIVRESPTSAYVRFKAGSVEPAHHHTF 234
           +  + ++  +C ICCL K  EF PV IMPGG M+IVRE+PTSA VRFKAGSVEPAHHHTF
Sbjct: 176 TKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTF 235

Query: 235 GHDLVVISGKKKVWNLTKKESYDLVDGDFLFTPAGDVHRVKYFEDTEFFIRWDGHWDIFL 294
           GHDLVVI GKK VWNL+KKE  DLVDGD+LFTPAGDVHRVKY EDTEFFI WDGHWDIFL
Sbjct: 236 GHDLVVIKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFL 295

Query: 295 DEDLDAARRAIDAE 308
           DEDL+ A++AI+ E
Sbjct: 296 DEDLETAKKAIEEE 309



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,768,760
Number of extensions: 228072
Number of successful extensions: 450
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)