Os01g0521500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ family protein.
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Os01g0521500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.22 | 0.171 | 10.9 | 0.167 | 0.401 | -0.526 | -0.188 | -0.671 | 0.0518 | 4.89 | 25.05 | 2158 | -- | -- |
| 13.72 | 0.173 | 10.9 | -0.0034 | 0.398 | -0.473 | -0.123 | -- | 0.0153 | 4.58 | 26 | 3206 | -- | -- |
| 13.3 | 0.17 | 10.9 | 0.169 | 0.403 | -0.532 | -- | -0.674 | 0.0528 | 4.82 | 25.06 | 2098 | -- | -- |
| 13.78 | 0.173 | 10.9 | -0.00815 | 0.395 | -0.483 | -- | -- | 0.0138 | 4.58 | 25.8 | 3210 | -- | -- |
| 20.66 | 0.212 | 10.9 | 0.0987 | -- | -0.584 | -- | -0.538 | 0.0424 | -- | 25.53 | 2654 | -- | -- |
| 17.47 | 0.196 | 10.9 | 0.203 | 0.405 | -- | -0.176 | -- | 0.136 | 4.54 | -- | -- | -- | -- |
| 17.55 | 0.196 | 10.9 | 0.204 | 0.403 | -- | -- | -- | 0.136 | 4.49 | -- | -- | -- | -- |
| 21.1 | 0.214 | 10.9 | -0.0049 | -- | -0.535 | -- | -- | 0.00712 | -- | 26.2 | 2670 | -- | -- |
| 13.78 | 0.173 | 10.9 | -- | 0.396 | -0.48 | -- | -- | 0.0153 | 4.58 | 25.85 | 3209 | -- | -- |
| 26.25 | 0.239 | 10.9 | 0.22 | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
| 18.65 | 0.202 | 10.9 | -- | 0.407 | -- | -- | -- | 0.114 | 4.47 | -- | -- | -- | -- |
| 21.1 | 0.214 | 10.9 | -- | -- | -0.534 | -- | -- | 0.00818 | -- | 26.2 | 2667 | -- | -- |
| 27.52 | 0.245 | 10.9 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 2 | 12.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 3 | 12.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 7 | 12.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 10 | 12.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 13 | 12.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 16 | 12.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 33 | 12.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 35 | 12.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 41 | 12.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 44 | 12.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 52 | 12.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 124 | 12.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 168 | 12.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 356 | 13.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 454 | 13.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 455 | 13.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 460 | 13.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 477 | 13.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 500 | 13.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 521 | 13.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 609 | 13.34 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 683 | 13.36 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 740 | 13.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 14 |