BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0521500 Os01g0521500|AK100846
(603 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65280.1 | chr1:24245501-24248521 FORWARD LENGTH=589 389 e-108
AT5G22080.1 | chr5:7310600-7313540 REVERSE LENGTH=247 66 6e-11
AT5G49060.1 | chr5:19886764-19888136 FORWARD LENGTH=355 54 3e-07
AT3G57340.1 | chr3:21219175-21220278 FORWARD LENGTH=368 53 4e-07
AT3G08970.1 | chr3:2737589-2740265 FORWARD LENGTH=573 52 1e-06
AT5G05750.1 | chr5:1727595-1728479 FORWARD LENGTH=295 51 2e-06
AT1G61770.1 | chr1:22810220-22812370 FORWARD LENGTH=301 49 8e-06
>AT1G65280.1 | chr1:24245501-24248521 FORWARD LENGTH=589
Length = 588
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/485 (44%), Positives = 277/485 (57%), Gaps = 24/485 (4%)
Query: 133 IVRDILGDFPAVAGELRQLLQMIDNGEGIDISGISDKPLVXXXXXXXXXXXXXXXXNGAY 192
+V+++L +FP V +L+QLL+MID+G+ +DI GIS+ L + +
Sbjct: 114 VVKEMLLEFPNVGNDLKQLLKMIDDGQAVDIKGISESTLKKRLKKLFLSLKLKERGDRVF 173
Query: 193 LLPPKSVPTLDVVGSALVASGELADNENKNPASPTRQEQPSSNFDVQNKNDSTPEEPAKN 252
LLPP + P+LDVVG L+ GE ++ + +SP ++ + K + N
Sbjct: 174 LLPPGASPSLDVVGH-LIKGGEEDVEKSLDDSSPLKETE---------KGLADENGLGSN 223
Query: 253 DADE-QPPKRRVIGPAMPSRXXXXXXXXXXXXXRSRDAEVEADDG-FLIGXXXXXXXXXX 310
AD+ PK+RVIGPAMPS +D + IG
Sbjct: 224 SADDVTGPKKRVIGPAMPSAELLAAAAKLTEAQAELREAELEEDSEYFIGPAPPAVVAEV 283
Query: 311 XXXXXXXXXXXVTRILAADENSPYDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQ 370
VTRI+ AD NSPYDV+G+N M++DN+KKRYWKLSLLVHPDKC HP AQ
Sbjct: 284 ASSNEAERFEEVTRIMEADANSPYDVLGVNHNMAADNMKKRYWKLSLLVHPDKCSHPQAQ 343
Query: 371 EAFVKLNNAFKDLQDPEKRGVIDXXXXXXXXXXQFEVELKAMREAAEWRRLQGVSLEGDD 430
EAFV LN AFK+LQDPEKR +D F+VEL++M+EAA+WRR QG+S+EGD
Sbjct: 344 EAFVLLNKAFKELQDPEKRKAMDDKIKLKEEQEAFKVELRSMQEAAQWRRSQGISMEGDA 403
Query: 431 ELLAVPKQAQAPKRDEWMTTLPPERKPGVPMHSTTSFSMNGKEGRGDTSVWTDTPLERAQ 490
ELLA + PKRDEWMTTLPPERK GV + +T+FS N +EGRGDT+ WTDTP+++A+
Sbjct: 404 ELLAATEVKPEPKRDEWMTTLPPERKVGVAVQQSTTFSRNAREGRGDTTAWTDTPMDKAE 463
Query: 491 KAQQNYLEAYNXXXXXXXXXXXXXXTS-DASLVDTYNSSKRSVSLVXXXXX--------- 540
+A+ NYLEAYN S DA LVD YN KR+ SLV
Sbjct: 464 RAKMNYLEAYNKASALASNEGENMKRSMDAELVDKYNKEKRAKSLVEKHREDSSSSSSRL 523
Query: 541 --XXXXXXXXXXXXXXXXXGNHPWKPWDREKDLTAGRQNVNLDPENMAQGLSSRFSSGAV 598
G HPWKPWDRE DLTAGRQNV LD + MA+GL+S+FSSG
Sbjct: 524 KKKKKLSSSKEKTEKDEWVGKHPWKPWDRENDLTAGRQNVKLDADGMAEGLASKFSSGNF 583
Query: 599 QRNFL 603
QR+FL
Sbjct: 584 QRSFL 588
>AT5G22080.1 | chr5:7310600-7313540 REVERSE LENGTH=247
Length = 246
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 50/71 (70%)
Query: 322 VTRILAADENSPYDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFK 381
V RIL+ + +P++ + +++ S+D++K++Y K+SL+VHPDKC HP AQEAF L A +
Sbjct: 28 VGRILSCFKLNPFEHLNLSFDSSTDDVKRQYRKISLMVHPDKCKHPQAQEAFGALAKAQQ 87
Query: 382 DLQDPEKRGVI 392
L + ++R I
Sbjct: 88 LLLNDQERDYI 98
>AT5G49060.1 | chr5:19886764-19888136 FORWARD LENGTH=355
Length = 354
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 331 NSPYDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFKDLQDPEKR- 389
N Y ++G+ S D I+K Y KLSL VHPDK P ++EAF K++ AF L D R
Sbjct: 98 NDYYAILGLEKNCSVDEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVSKAFTCLSDGNSRR 157
Query: 390 -----GVID 393
G++D
Sbjct: 158 QFDQVGIVD 166
>AT3G57340.1 | chr3:21219175-21220278 FORWARD LENGTH=368
Length = 367
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 334 YDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFKDLQDPEKRGVID 393
Y+++G+ S D+++K Y KLSL VHPDK P ++EAF ++ AF+ L + E R D
Sbjct: 115 YEILGLESNCSVDDVRKAYRKLSLKVHPDKNQAPGSEEAFKSVSKAFQCLSNDEARKKYD 174
>AT3G08970.1 | chr3:2737589-2740265 FORWARD LENGTH=573
Length = 572
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 333 PYDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFKDLQDPEKR 389
PY V+G++ I+K + K SL HPDK AQE F ++NNA++ L D EKR
Sbjct: 28 PYKVLGVSKDAKQREIQKAFHKQSLKYHPDKNKDKGAQEKFAEINNAYEILSDEEKR 84
>AT5G05750.1 | chr5:1727595-1728479 FORWARD LENGTH=295
Length = 294
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 334 YDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFKDLQDPEKRGVID 393
Y+++G+ S ++++K Y KLSL VHPDK P ++EAF ++ AF+ L + + R D
Sbjct: 116 YEILGLKSNCSVEDLRKSYRKLSLKVHPDKNKAPGSEEAFKSVSKAFQCLSNEDTRRKYD 175
>AT1G61770.1 | chr1:22810220-22812370 FORWARD LENGTH=301
Length = 300
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 323 TRILAADENSPYDVVGINWKMSSDNIKKRYWKLSLLVHPDKCPHPSAQEAFVKLNNAFKD 382
T I E+ Y ++G+ ++ +IK+ Y+KLSL HPDK P P +++ FVK+ A++
Sbjct: 26 TAIYCGAEDC-YALLGVAQDANASDIKRSYYKLSLQHHPDKNPDPESRKLFVKIATAYEI 84
Query: 383 LQDPEKRGVID 393
L+D R D
Sbjct: 85 LKDNTTRAQYD 95
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,920,146
Number of extensions: 338662
Number of successful extensions: 956
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 979
Number of HSP's successfully gapped: 9
Length of query: 603
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 499
Effective length of database: 8,255,305
Effective search space: 4119397195
Effective search space used: 4119397195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)